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Search results 1 to 100 out of 674 for Recombinant Inbred Line

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Type Details Score
Publication
12582628
First Author: Loudet O
Title: Bay-0 x Shahdara recombinant inbred line population: a powerful tool for the genetic dissection of complex traits in Arabidopsis.
Year: 2002
Journal: Theor Appl Genet
Volume: 104
Pages: 1173-1184
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Publication
23240770
First Author: Meissner M
Title: Mapping quantitative trait loci for freezing tolerance in a recombinant inbred line population of Arabidopsis thaliana accessions Tenela and C24 reveals REVEILLE1 as negative regulator of cold acclimation.
Year: 2013
Journal: Plant Cell Environ
Volume: 36
Pages: 1256-67
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Publication
17044735
First Author: Singer T
Title: A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization.
Year: 2006
Journal: PLoS Genet
Volume: 2
Pages: e144
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Publication
15760357
First Author: Callahan HS
Title: Plasticity genes and plasticity costs: a new approach using an Arabidopsis recombinant inbred population.
Year: 2005
Journal: New Phytol
Volume: 166
Pages: 129-39
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Publication
18631293
First Author: Waters BM
Title: Quantitative trait locus mapping for seed mineral concentrations in two Arabidopsis thaliana recombinant inbred populations.
Year: 2008
Journal: New Phytol
Volume: 179
Pages: 1033-1047
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Publication
15908601
First Author: Magliano TM
Title: New Arabidopsis recombinant inbred lines (Landsberg erecta x Nossen) reveal natural variation in phytochrome-mediated responses.
Year: 2005
Journal: Plant Physiol
Volume: 138
Pages: 1126-35
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Publication
17893725
First Author: Fu FY
Title: Localization of QTLs for seed color using recombinant inbred lines of Brassica napus in different environments.
Year: 2007
Journal: Genome
Volume: 50
Pages: 840-54
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Gene
AT4G28680 | locus:2139855 | TYRDC | L-tyrosine decarboxylase
Length: 3806  
Chromosome Location: Chr4: 14155064-14158869
Organism . Short Name: A. thaliana
TAIR Computational Description: L-tyrosine decarboxylase;(source:Araport11)
TAIR Curator Summary: Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.
TAIR Short Description: L-tyrosine decarboxylase
TAIR Aliases: AtTYDC, TYDC, TYRDC, TYRDC1
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Gene
AT2G31840 | locus:2045208 | MRL7-L | Mesophyll-cell RNAi Library line 7-like
Length: 2050  
Chromosome Location: Chr2: 13537755-13539804
Organism . Short Name: A. thaliana
TAIR Computational Description: Thioredoxin superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Thioredoxin superfamily protein
TAIR Aliases: MRL7-L
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Gene
AT4G28590 | locus:2139850 | MRL7 | Mesophyll-cell RNAi Library line 7
Length: 1871  
Chromosome Location: Chr4: 14125212-14127082
Organism . Short Name: A. thaliana
TAIR Computational Description: polyadenylate-binding protein 2-binding protein;(source:Araport11)
TAIR Curator Summary: Encodes a dual-targeted nuclear/plastidial phytochrome signaling component required for PEP assembly. It controls PhAPG expression primarily from the nucleus by interacting with phytochromes and promoting their localization to photobodies for the degradation of the transcriptional regulators PIF1 and PIF3. RCB-dependent PIF degradation in the nucleus signals the plastids for PEP assembly and PhAPG expression.
TAIR Short Description: NULL
TAIR Aliases: AtECB1, ECB1, MRL7, PDE333, RCB, SVR4
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Ontology Term Synonym
Ontology Term Synonym
Name: LINE
Type: synonym
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Publication
9263449
First Author: Buell CR
Title: Use of Arabidopsis recombinant inbred lines reveals a monogenic and a novel digenic resistance mechanism to Xanthomonas campestris pv campestris.
Year: 1997
Journal: Plant J
Volume: 12
Pages: 21-9
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Gene
AT1G80740 | locus:2025787 | CMT1 | chromomethylase 1
Length: 4655  
Chromosome Location: Chr1: 30342394-30347048
Organism . Short Name: A. thaliana
TAIR Computational Description: chromomethylase 1;(source:Araport11)
TAIR Curator Summary: ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
TAIR Short Description: chromomethylase 1
TAIR Aliases: CMT1, DMT4
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GO Term
GO:0062121 | linear element maturation
Description: The meiotic cell cycle chromosome organization process in which LinE complexes closely associate with chromatin during meiotic prophase to form mature linear elements.
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Gene
AT1G73680 | locus:2027799 | ALPHA DOX2 | alpha dioxygenase
Length: 3714  
Chromosome Location: Chr1: 27703944-27707657
Organism . Short Name: A. thaliana
TAIR Computational Description: alpha dioxygenase;(source:Araport11)
TAIR Curator Summary: Encodes an alpha dioxygenase. Recombinant protein catalyzes the conversion of a wide range of fatty acids into 2(R)-hydroperoxy derivatives.
TAIR Short Description: alpha dioxygenase
TAIR Aliases: ALPHA DOX2, alpha-DOX2
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Ontology Term Synonym
Ontology Term Synonym
Name: LINE element
Type: synonym
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GO Term
GO:1990973 | transmembrane actin-associated (TAN) line
Description: A linear array of nuclear envelope membrane proteins composed of nesprin-2G and SUN2, which couple the nucleus to moving actin cables, resulting in rearward nuclear transport (away from the leading edge).
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Ontology Term Synonym
Ontology Term Synonym
Name: M line
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: Z line
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: TAN line
Type: synonym
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Gene
AT4G14140 | locus:2129450 | DMT2 | DNA methyltransferase 2
Length: 6134  
Chromosome Location: Chr4: 8145998-8152131
Organism . Short Name: A. thaliana
TAIR Computational Description: DNA methyltransferase 2;(source:Araport11)
TAIR Curator Summary: This gene is predicted to encode a DNA methyltransferase. A plant line expressing an RNAi construct directed against DMT2 has reduced agrobacterium-mediated tumor formation.
TAIR Short Description: DNA methyltransferase 2
TAIR Aliases: DMT02, DMT2, MET02, MET2
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Gene
AT5G10550 | locus:2142474 | GTE2 | global transcription factor group E2
Length: 1919  
Chromosome Location: Chr5: 3332995-3334913
Organism . Short Name: A. thaliana
TAIR Computational Description: global transcription factor group E2;(source:Araport11)
TAIR Curator Summary: This gene is predicted to encode a bromodomain-containing protein. A plant line expressing RNAi constructs targeted against GTE7 shows some resistance to agrobacterium-mediated root transformation.
TAIR Short Description: global transcription factor group E2
TAIR Aliases: GTE2
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SO Term
SO:0002271 | Jockey_LINE_retrotransposon
Description: Jockey retrotransposons are LINE elements (SO:0000194) found only in arthropods. The full-length element is ~ 5 kb and contains two open reading frames (SO:0000236), ORF1 (568 aa) and ORF2 (916 aa), the second of which encodes an apurinic endonuclease (APE) and a reverse transcriptase (RT).
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SO Term
SO:0002273 | I_LINE_retrotransposon
Description: Elements of the LINE I superfamily are similar to the Jockey and L1 superfamily. They contains two ORFs, the.second of which includes  Apurinic endonuclease (APE) and  reverse transcriptase (RT). The I superfamily encodes an RH (RNase H) domain downstream of the RT domain.
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Ontology Term Synonym
Ontology Term Synonym
Name: Cell Line Ontology
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: R2 LINE retrotransposon
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: RTE LINE retrotransposon
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: L1 LINE retrotransposon
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: LINE 1 element
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: Jockey LINE retrotransposon
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: LINE Jockey element
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: I LINE retrotransposon
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: LINE I element
Type: synonym
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GO Term
GO:0060594 | mammary gland specification
Description: The regionalization process in which the mammary line is specified. The mammary line is a ridge of epidermal cells that will form the mammary placodes.
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Ontology Term Synonym
Ontology Term Synonym
Name: mammary line specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: mammary line formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: LinE chromosome loading
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: LinE focus formation
Type: synonym
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Gene
AT1G48620 | locus:2038573 | HON5 | high mobility group A5
Length: 3022  
Chromosome Location: Chr1: 17973642-17976663
Organism . Short Name: A. thaliana
TAIR Computational Description: high mobility group A5;(source:Araport11)
TAIR Curator Summary: This gene is predicted to encodes a histone H1/H5 family member. A plant line expressing an RNAi construct targeted against HON5 shows a reduced level of agrobacterium-mediated root transformation.
TAIR Short Description: high mobility group A5
TAIR Aliases: HON5
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Gene
AT2G20690 | locus:2051394 | AT2G20690 | -
 
Length: 1670  
Chromosome Location: Chr2: 8923305-8924974
Organism . Short Name: A. thaliana
TAIR Computational Description: lumazine-binding family protein;(source:Araport11)
TAIR Curator Summary: A synthetic gene encoding the catalytic domain of the Arabidopsis thaliana gene At2g20690 was recombinant expressed in E. coli demonstrating the molecular function of riboflavin synthase. The mRNA is cell-to-cell mobile.
TAIR Short Description: lumazine-binding family protein
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Gene
AT5G26310 | locus:2151059 | UGT72E3 | -
Length: 1809  
Chromosome Location: Chr5: 9234600-9236408
Organism . Short Name: A. thaliana
TAIR Computational Description: UDP-Glycosyltransferase superfamily protein;(source:Araport11)
TAIR Curator Summary: UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides. Can influence the kinetics of lignin deposition by regulating monolignol flow to the cell wall as well as the potential of this compartment to incorporate monomers into the growing lignin polymer.
TAIR Short Description: UDP-Glycosyltransferase superfamily protein
TAIR Aliases: UGT72E3
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SO Term
SO:0000194 | LINE_element
Description: A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats.
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SO Term
SO:0002272 | L1_LINE_retrotransposon
Description: Long interspersed element-1 (LINE-1) elements are found in the human genome, which contains ORF1 (open reading frame1, including CC, coiled coil; RRM, RNA recognition motif; CTD, carboxyl-terminal domain) and ORF2 (including EN, endonuclease; RT, reverse transcriptase; C, cysteine-rich domain). The L1-encoded proteins (ORF1p and ORF2p) can mobilize nonautonomous retrotransposons, other noncoding RNAs, and messenger RNAs.
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Interaction Term
MI_2415 | cell line ontology
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GO Term
GO:0048883 | neuromast primordium migration
Description: The migration of a cluster of a relatively undifferentiated cell originating at specific cephalic placodes and depositing proneuromasts along a developing lateral line, from which the neuromasts will develop.
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Ontology Term Synonym
Ontology Term Synonym
Name: lateral line primordium migration
Type: synonym
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Gene
AT5G17770 | locus:2176001 | CBR | NADH:cytochrome B5 reductase 1
Length: 2628  
Chromosome Location: Chr5: 5864182-5866809
Organism . Short Name: A. thaliana
TAIR Computational Description: NADH:cytochrome B5 reductase 1;(source:Araport11)
TAIR Curator Summary: Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.
TAIR Short Description: NADH:cytochrome B5 reductase 1
TAIR Aliases: ATCBR, CBR, CBR1
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Publication
25746634
First Author: Liu J
Title: Biosynthesis of the anti-infective marformycins featuring pre-NRPS assembly line N-formylation and O-methylation and post-assembly line C-hydroxylation chemistries.
Year: 2015
Journal: Org Lett
Volume: 17
Pages: 1509-12
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Gene
AT2G43430 | locus:2058239 | GLX2-1 | glyoxalase 2-1
Length: 2986  
Chromosome Location: Chr2: 18035349-18038334
Organism . Short Name: A. thaliana
TAIR Computational Description: glyoxalase 2-1;(source:Araport11)
TAIR Curator Summary: Encodes a predicted mitochondrial glyoxalase GLX2-1. Studies using recombinant protein show that GLX2-1 contains a dinuclear metal binding site, but does not have glyoxalase 2 activity. Required for abiotic stress but not for normal plant growth.
TAIR Short Description: glyoxalase 2-1
TAIR Aliases: GLX2-1, GLY1, GLYII4
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Gene
AT3G02980 | locus:2075467 | MCC1 | MEIOTIC CONTROL OF CROSSOVERS1
Length: 1848  
Chromosome Location: Chr3: 670657-672504
Organism . Short Name: A. thaliana
TAIR Computational Description: MEIOTIC CONTROL OF CROSSOVERS1;(source:Araport11)
TAIR Curator Summary: Encodes MEIOTIC CONTROL OF CROSSOVERS1 (MCC1), a GCN5-related histone N-acetyltransferase. MCC1 appeared to be required in meiosis for normal chiasma number and distribution and for chromosome segregation. Activation tagging line has increased level of histone H3 acetylation.
TAIR Short Description: MEIOTIC CONTROL OF CROSSOVERS1
TAIR Aliases: MCC1
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Publication
20336072
First Author: Atwell S
Title: Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.
Year: 2010
Journal: Nature
Volume: 465
Pages: 627-31
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Gene
AT5G66690 | locus:2173664 | UGT72E2 | -
Length: 1774  
Chromosome Location: Chr5: 26625049-26626822
Organism . Short Name: A. thaliana
TAIR Computational Description: UDP-Glycosyltransferase superfamily protein;(source:Araport11)
TAIR Curator Summary: UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. The mRNA is cell-to-cell mobile.
TAIR Short Description: UDP-Glycosyltransferase superfamily protein
TAIR Aliases: UGT72E2
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Gene
AT5G23580 | locus:2171726 | CDPK9 | calmodulin-like domain protein kinase 9
Length: 2418  
Chromosome Location: Chr5: 7950202-7952619
Organism . Short Name: A. thaliana
TAIR Computational Description: calmodulin-like domain protein kinase 9;(source:Araport11)
TAIR Curator Summary: Member of a unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+
TAIR Short Description: calmodulin-like domain protein kinase 9
TAIR Aliases: ATCDPK9, ATCPK12, CDPK9, CPK12
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Gene
AT5G39830 | locus:2151916 | DEG8 | degradation of periplasmic proteins 8
Length: 3134  
Chromosome Location: Chr5: 15942764-15945897
Organism . Short Name: A. thaliana
TAIR Computational Description: Trypsin family protein with PDZ domain-containing protein;(source:Araport11)
TAIR Curator Summary: Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.
TAIR Short Description: Trypsin family protein with PDZ domain
TAIR Aliases: DEG8, DEGP8
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Protein Domain
IPR031420
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Genetic variations in the PhyA locus of A. thaliana inbred strains and the effects on seedling growth under infrared light are reported.
Organism: A. thaliana
Gene: PHYA
PubMed Id: 15908601
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Ontology Term Synonym
Ontology Term Synonym
Name: protein localization to M line
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: caudal lateral line nerve development
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: rostral lateral line nerve development
Type: synonym
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Gene
AT5G51040 | locus:2157418 | SDHAF2 | Succinate dehydrogenase assembly factor 2
Length: 1603  
Chromosome Location: Chr5: 20750513-20752115
Organism . Short Name: A. thaliana
TAIR Computational Description: succinate dehydrogenase assembly factor;(source:Araport11)
TAIR Curator Summary: Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.
TAIR Short Description: NULL
TAIR Aliases: SDHAF2
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Gene
AT5G53430 | locus:2178446 | SDG29 | SET domain group 29
Length: 6977  
Chromosome Location: Chr5: 21677146-21684122
Organism . Short Name: A. thaliana
TAIR Computational Description: SET domain group 29;(source:Araport11)
TAIR Curator Summary: Homology Subgroup III; Orthology Group 2 - A putative histone methyltransferase (predicted to methylate H3K4) related to the Drosophila trithorax group proteins TRX and TRR and the yeast gene SET1. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
TAIR Short Description: SET domain group 29
TAIR Aliases: ATX5, SDG29, SET29
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Gene
AT1G08280 | locus:2199993 | AT1G08280 | -
Length: 2095  
Chromosome Location: Chr1: 2607877-2609971
Organism . Short Name: A. thaliana
TAIR Computational Description: Glycosyltransferase family 29 (sialyltransferase) family protein;(source:Araport11)
TAIR Curator Summary: Encodes a glycosyltransferase (GT) GALT29A, which belongs to the Carbohydrate Active Enzyme family GT29. GALT29A co-expresses with other arabinogalactan GTs, GALT31A and GLCAT14A. The recombinant GALT29A expressed in Nicotiana benthamiana demonstrated a galactosyltransferase activity, transferring galactose from UDP-galactose to a mixture of various oligosaccharides derived from arabinogalactan proteins.
TAIR Short Description: Glycosyltransferase family 29 (sialyltransferase) family protein
TAIR Aliases: GALT29A
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Protein Domain
IPR015617
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Publication
16862160
First Author: Liu P
Title: Candidate lung tumor susceptibility genes identified through whole-genome association analyses in inbred mice.
Year: 2006
Journal: Nat Genet
Volume: 38
Pages: 888-95
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Recombinant CDR1 was characterized.
Organism: A. thaliana
Gene: CDR1
PubMed Id: 17650510
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Gene
AT3G57520 | locus:2103488 | SIP2 | seed imbibition 2
Length: 4430  
Chromosome Location: Chr3: 21288742-21293171
Organism . Short Name: A. thaliana
TAIR Computational Description: seed imbibition 2;(source:Araport11)
TAIR Curator Summary: SIP2 encodes a raffinose-specific alpha-galactosidase that catalyzes the breakdown of raffinose into alpha-galatose and sucrose. This enzyme may function in unloading raffinose from the phloem as part of sink metabolism. Although it was originally predicted to act as a raffinose synthase (RS), that activity was not observed for recombinant SIP2.
TAIR Short Description: seed imbibition 2
TAIR Aliases: AtSIP2, RS2, SIP2
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Protein Domain
IPR031770
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Protein Domain
IPR038204
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Protein Domain
IPR002183
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Gene
AT5G09790 | locus:2144841 | ATXR5 | ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
Length: 2229  
Chromosome Location: Chr5: 3038978-3041206
Organism . Short Name: A. thaliana
TAIR Computational Description: TRITHORAX-RELATED PROTEIN 5;(source:Araport11)
TAIR Curator Summary: Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
TAIR Short Description: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
TAIR Aliases: ATXR5, PDE336, SDG15
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Gene
AT4G35920 | locus:2125369 | MCA1 | mid1-complementing activity 1
Length: 3706  
Chromosome Location: Chr4: 17011788-17015493
Organism . Short Name: A. thaliana
TAIR Computational Description: PLAC8 family protein;(source:Araport11)
TAIR Curator Summary: Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.
TAIR Short Description: PLAC8 family protein
TAIR Aliases: MCA1
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GO Term
GO:0030018 | Z disc
Description: Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
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GO Term
GO:0031430 | M band
Description: The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines.
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Ontology Term Synonym
Ontology Term Synonym
Name: maintenance of germ line stem-cell niche
Type: synonym
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Interaction Experiment
Interaction Experiment
Name: martin-2009a-1
Description: Recombinant plant gamma carbonic anhydrase homotrimers bind inorganic carbon.
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Interaction Experiment
Interaction Experiment
Name: martin-2009a-2
Description: Recombinant plant gamma carbonic anhydrase homotrimers bind inorganic carbon.
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Protein Domain
IPR002662
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Protein Domain
IPR000778
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Protein Domain
IPR039207
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Publication
23881252
First Author: Tirosh Y
Title: Short toxin-like proteins attack the defense line of innate immunity.
Year: 2013
Journal: Toxins (Basel)
Volume: 5
Pages: 1314-31
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Gene
AT4G13460 | locus:2140827 | SUVH9 | SU(VAR)3-9 homolog 9
Length: 3111  
Chromosome Location: Chr4: 7823894-7827004
Organism . Short Name: A. thaliana
TAIR Computational Description: SU(VAR)3-9 homolog 9;(source:Araport11)
TAIR Curator Summary: Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
TAIR Short Description: SU(VAR)3-9 homolog 9
TAIR Aliases: SDG22, SET22, SUVH9
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Gene
AT5G25810 | locus:2145249 | tny | TINY
Length: 1357  
Chromosome Location: Chr5: 8986542-8987898
Organism . Short Name: A. thaliana
TAIR Computational Description: Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.
TAIR Short Description: Integrase-type DNA-binding superfamily protein
TAIR Aliases: ERF040, TNY
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: FQR is overexpressed in a line hypersensitive to fungal pathogens
Organism: A. thaliana
Gene: FQR1
PubMed Id: 23464356
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Protein Domain
IPR005597
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: recombinant annexin 1 has peroxidase activity.
Organism: A. thaliana
Gene: ANNAT1
PubMed Id: 16153598
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Gene
AT1G78570 | locus:2202960 | RHM1 | rhamnose biosynthesis 1
Length: 2899  
Chromosome Location: Chr1: 29549540-29552438
Organism . Short Name: A. thaliana
TAIR Computational Description: rhamnose biosynthesis 1;(source:Araport11)
TAIR Curator Summary: Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli.
TAIR Short Description: rhamnose biosynthesis 1
TAIR Aliases: ATRHM1, RHM1, ROL1
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Gene
AT5G16510 | locus:2171362 | RGP5 | reversibly glycosylated polypeptide 5
Length: 1998  
Chromosome Location: Chr5: 5392576-5394573
Organism . Short Name: A. thaliana
TAIR Computational Description: Alpha-1,4-glucan-protein synthase family protein;(source:Araport11)
TAIR Curator Summary: RGP5 is a member of the reversably-glycosylated family of proteins. Analyses using tagged RGP5 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP5 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1, RGP2, and RGP3 proteins do have activity in the same assay. RGP5 can form complexes with RGP1 and RGP2.
TAIR Short Description: Alpha-1,4-glucan-protein synthase family protein
TAIR Aliases: RGP5
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GO Term
GO:0062119 | LinE complex
Description: A protein complex that associates with chromatin to form linear elements in fission yeast. In S. pombe, the LinE complex contains four main structural components (Rec10, Rec25, Rec27, and Mug20) and other associated proteins.
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Gene
AT1G79000 | locus:2207295 | HAC1 | histone acetyltransferase of the CBP family 1
Length: 8399  
Chromosome Location: Chr1: 29716350-29724748
Organism . Short Name: A. thaliana
TAIR Computational Description: histone acetyltransferase of the CBP family 1;(source:Araport11)
TAIR Curator Summary: Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides, suggesting that HAC1, HAC5, and HAC12 can acetylate any of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation.
TAIR Short Description: histone acetyltransferase of the CBP family 1
TAIR Aliases: ATHAC1, ATHPCAT2, HAC1, PCAT2
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Gene
AT3G07130 | locus:2098500 | PAP15 | purple acid phosphatase 15
Length: 2495  
Chromosome Location: Chr3: 2255710-2258204
Organism . Short Name: A. thaliana
TAIR Computational Description: purple acid phosphatase 15;(source:Araport11)
TAIR Curator Summary: Encodes PAP15, a purple acid phosphatase with phytase activity. Expression of PAP15 is developmentally and temporally regulated, with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific, with strongest expression in the vasculature, pollen grains, and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants, particularly during seed and pollen germination.
TAIR Short Description: purple acid phosphatase 15
TAIR Aliases: ATPAP15, PAP15
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Gene
AT5G50750 | locus:2163305 | RGP4 | reversibly glycosylated polypeptide 4
Length: 1796  
Chromosome Location: Chr5: 20640992-20642787
Organism . Short Name: A. thaliana
TAIR Computational Description: reversibly glycosylated polypeptide 4;(source:Araport11)
TAIR Curator Summary: RGP4 is a reversibly glycosylated polypeptide. Analyses using tagged RGP4 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP4 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1, RGP2, and RGP3 proteins do have activity in the same assay. RGP4 can form complexes with RGP1 and RGP2. RGP4 is expressed during seed development.
TAIR Short Description: reversibly glycosylated polypeptide 4
TAIR Aliases: RGP4
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Protein Domain
IPR010740
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SO Term
SO:0002269 | R2_LINE_retrotransposon
Description: R2 retrotransposons are LINE elements (SO:0000194) that insert site-specifically into the host organism's 28S ribosomal RNA (rRNA) genes.
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SO Term
SO:0002270 | RTE_LINE_retrotransposon
Description: RTE retrotransposons are LINE elements (SO:0000194) that contain a domain with homology to the apurinic-apyrimidic (AP) endonucleases in addition to the previously identified reverse transcriptase domain.
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GO Term
GO:0048896 | lateral line nerve glial cell migration
Description: The movement of a glial cell along the axons in a lateral line nerve.
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Ontology Term Synonym
Ontology Term Synonym
Name: maintenance of germ line stem cell niche
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: glial cell migration in lateral line nerve
Type: synonym
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Gene
AT3G10700 | locus:2075730 | GalAK | galacturonic acid kinase
Length: 4662  
Chromosome Location: Chr3: 3346509-3351170
Organism . Short Name: A. thaliana
TAIR Computational Description: galacturonic acid kinase;(source:Araport11)
TAIR Curator Summary: Encodes a GHMP kinase family protein that acts as a galacturonic acid-1-phosphate kinase that catalyzes the production of galacturonic acid-1-phosphate. This is a precursor of the important cell wall building block UDP-galacturonic acid. Based on gene trap line GT8007, the gene appears to be expressed in a petal and stamen-specific manner, between flower stages 8 to 11, however, later RT-qPCR analysis demonstrates that the transcript is present throughout the plant in all tissues tested.
TAIR Short Description: galacturonic acid kinase
TAIR Aliases: GalAK
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Gene
AT4G09730 | locus:2118509 | RH39 | RH39
Length: 3468  
Chromosome Location: Chr4: 6136244-6139711
Organism . Short Name: A. thaliana
TAIR Computational Description: RH39;(source:Araport11)
TAIR Curator Summary: Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase. The mRNA is cell-to-cell mobile.
TAIR Short Description: RH39
TAIR Aliases: RH39
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Publication
11115883
First Author: Swaminathan K
Title: An enhancer trap line associated with a D-class cyclin gene in Arabidopsis.
Year: 2000
Journal: Plant Physiol
Volume: 124
Pages: 1658-67
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