Explore the Arabidopsis genome

ThaleMine

Drill down on the genome. Analyze gene and protein data from TAIR, expression and interaction data from BAR, ortholog data from Panther, and more. Generate, save, and analyze result sets. Use plain text or structured queries to find interactive gene pages and protein reports.

Mine

JBrowse

Scroll through the genome and zoom in for details. Layer on annotation tracks that display TAIR 10 gene structure data, EPIC-CoGe epigenomics data, and more. Use the latest, fully featured GMOD JBrowse tool (or, for a limited time, the older GBrowse tool).

Browse

Science Applications

Find other interactive application programs that help you explore plant genomics. Araport hosts applications that integrate data from other web sites using the web services model of on-request data exchange. Araport hosts science apps that were contributed by its members and its users.

Apps

Search the data

Quick Search

Get started by searching for keywords across ThaleMine and all of the Araport website.


BLAST

Use your sequence to search for homology across a selection of Arabidopsis genomic data sets and collections of plant proteomes.

BLAST

Raw Data

Download complete or customized data sets, in various formats (GFF, FASTA, etc), for your own analysis pipelines.

Download

Join the community

News

Get feeds of science news, recent publications, upcoming conferences and courses, job postings, and more.

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Ask a Question

Want more? Send email to araport or post a question for the community at large.

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About Araport

Araport is the community portal for Arabidopsis sequence, annotation, and community data.

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News

Service Notices

2015-03-03 14:00
2015-02-27 18:30

The database server upgrade has been completed. The ThaleMine and GBrowse services should be back up and running. Visit https://apps.araport.org/thalemine and https://apps.araport.org/gb2/gbrowse/arabidopsis to access the applications. Please write to us at araport@jcvi.org if you notice any problems.

We are sorry for any inconvenience caused by this upgrade and thank you for your patience.

2015-02-27 13:00 to 18:00

The PostgreSQL database server that powers ThaleMine and GBrowse is undergoing a system upgrade today, which will make it unavailable for the next few of hours. This upgrade does not affect JBrowse.

We are sorry for any inconvenience caused. Please check back soon. Thank you!