Type |
Details |
Score |
Gene |
Length: |
2238
|
Chromosome Location: |
Chr5: 14235835-14238072 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
high chlorophyll fluorescent 109;(source:Araport11) |
TAIR Curator Summary: |
Required for normal processing of polycistronic plastidial transcripts |
TAIR Short Description: |
high chlorophyll fluorescent 109 |
TAIR Aliases: |
ATPRFB, HCF109 |
|
•
•
•
•
•
|
SO Term |
Description: |
An mRNA that encodes multiple proteins from at least two non-overlapping regions. |
|
•
•
•
•
•
|
SO Term |
Description: |
A transcript that is polycistronic. |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
polycistronic mRNA |
Type: |
synonym |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
polycistronic transcript |
Type: |
synonym |
|
•
•
•
•
•
|
SO Term |
Description: |
A primary transcript encoding for more than one gene product. |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
polycistronic primary transcript |
Type: |
synonym |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
polycistronic processed transcript |
Type: |
synonym |
|
•
•
•
•
•
|
SO Term |
Description: |
The untranslated sequence separating the 'cistrons' of multicistronic mRNA. |
|
•
•
•
•
•
|
SO Term |
Description: |
A gene that encodes a polycistronic transcript. |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
untranslated region polycistronic mRNA |
Type: |
synonym |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
gene with polycistronic transcript |
Type: |
synonym |
|
•
•
•
•
•
|
GO Term |
Description: |
The conversion of a primary mRNA transcript containing more than one complete protein-coding region into individual mature mRNA molecules. |
|
•
•
•
•
•
|
GO Term |
Description: |
The conversion of polycistronic RNA transcribed from a mitochondrial genome into mono- or bi-cistronic RNAs. |
|
•
•
•
•
•
|
Publication |
First Author: |
Fort P |
Title: |
Nucleotide sequence and complementation analysis of a polycistronic sporulation operon, spoVA, in Bacillus subtilis. |
Year: |
1985 |
Journal: |
J Gen Microbiol |
Volume: |
131 |
Pages: |
1091-105 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Gene |
Length: |
4115
|
Chromosome Location: |
Chr3: 5808666-5812780 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
high chlorophyll fluorescent 107;(source:Araport11) |
TAIR Curator Summary: |
It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. It binds in the psbT?psbH intercistronic region and blocks the progression of 5′ → 3′ exoribonucleases, which defines the 5′ end of processed psbH transcripts and also stabilizes the downstream RNA segment. In addition, HCF107 binding remodels the structure of the psbH 5′ UTR in a way that can account for its ability to enhance psbH translation. |
TAIR Short Description: |
high chlorophyll fluorescent 107 |
TAIR Aliases: |
HCF107 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cliffe LJ |
Title: |
Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei. |
Year: |
2010 |
Journal: |
Nucleic Acids Res |
Volume: |
38 |
Pages: |
3923-35 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
SO Term |
Description: |
An attribute describing a sequence that contains the code for more than one gene product. |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
SO Term |
Description: |
A gene that encodes a polycistronic mRNA. |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
505 |
Description: |
In pgr3-2; Affects the accumulation of the petL polycistronic RNA. |
Type: |
mutagenesis site |
End: |
505 |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
610 |
Description: |
In pgr3-1; Affects the accumulation of the petL polycistronic RNA. |
Type: |
mutagenesis site |
End: |
610 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
SO Term |
Description: |
A UTR bordered by the terminal and initial codons of two CDSs in a polycistronic transcript. Every UTR is either 5', 3' or internal. |
|
•
•
•
•
•
|
GO Term |
Description: |
Endonucleolytic cleavages between the SSU-rRNA and the LSU-rRNA of an rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. These cleavages liberate tRNAs from the polycistronic transcript as well as separating the SSU and LSU containing transcript. Note that the use of the word tetracistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript. |
|
•
•
•
•
•
|
SO Term |
Description: |
A trans_splicing_acceptor_site which appends the 22nt SL2 RNA leader sequence to the 5' end of mRNAs. SL2 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL3 RNA leader sequence to the 5' end of an mRNA. SL3 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL4 RNA leader sequence to the 5' end of an mRNA. SL4 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL5 RNA leader sequence to the 5' end of an mRNA. SL5 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL6 RNA leader sequence to the 5' end of an mRNA. SL6 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL9 RNA leader sequence to the 5' end of an mRNA. SL9 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL10 RNA leader sequence to the 5' end of an mRNA. SL10 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL11 RNA leader sequence to the 5' end of an mRNA. SL11 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
SO Term |
Description: |
A SL2_acceptor_site which appends the SL12 RNA leader sequence to the 5' end of an mRNA. SL12 acceptor sites occur in genes in internal segments of polycistronic transcripts. |
|
•
•
•
•
•
|
GO Term |
Description: |
A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase I. Factors required for RNA polymerase I transcription initiation include upstream activation factor (UAF), core factor (CF), TATA binding protein (TBP) and RRN3. In all species characterized, RNA polymerase I transcribes a large polycistronic transcript that is processed into several mature rRNAs (3 or 4 depending on the species), including the large subunit rRNA (28S in humans), the small subunit rRNA (18S in humans), as well as one or two additional smaller rRNAs (the 5.8S rRNA in humans). In most species, this large rRNA transcript is the sole product of RNA polymerase I. However there are rare exceptions, such as Trypanosoma brucei, where RNA polymerase I also transcribes certain mRNAs. |
|
•
•
•
•
•
|