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Search results 1 to 100 out of 694 for seedling

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Type Details Score
Gene
AT3G10420 | locus:2075825 | SPD1 | SEEDLING PLASTID DEVELOPMENT 1
Length: 3604  
Chromosome Location: Chr3: 3238996-3242599
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: SPD1
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Protein
SPD1_ARATH | F4J3R7
Organism . Name: Arabidopsis thaliana
Length: 684  
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Protein
SPD1_ARATH-2 | F4J3R7-2
Organism . Name: Arabidopsis thaliana
Length: 547  
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GO Term
GO:0090351 | seedling development
Description: The process whose specific outcome is the progression of the seedling over time, beginning with seed germination and ending when the first adult leaves emerge.
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Gene
AT5G46800 | locus:2178590 | BOU | A BOUT DE SOUFFLE
Length: 2280  
Chromosome Location: Chr5: 18988588-18990867
Organism . Short Name: A. thaliana
TAIR Computational Description: Mitochondrial substrate carrier family protein;(source:Araport11)
TAIR Curator Summary: Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein
TAIR Short Description: Mitochondrial substrate carrier family protein
TAIR Aliases: BOU
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Gene
AT3G02885 | locus:505006327 | GASA5 | GAST1 protein homolog 5
Length: 1322  
Chromosome Location: Chr3: 637921-639242
Organism . Short Name: A. thaliana
TAIR Computational Description: GAST1 protein homolog 5;(source:Araport11)
TAIR Curator Summary: GASA5, is involved in the regulation of seedling thermotolerance.
TAIR Short Description: GAST1 protein homolog 5
TAIR Aliases: GASA5
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GO Term
GO:1900140 | regulation of seedling development
Description: Any process that modulates the frequency, rate or extent of seedling development.
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Gene
AT2G42790 | locus:2052379 | CSY3 | citrate synthase 3
Length: 3233  
Chromosome Location: Chr2: 17802841-17806073
Organism . Short Name: A. thaliana
TAIR Computational Description: citrate synthase 3;(source:Araport11)
TAIR Curator Summary: Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.
TAIR Short Description: citrate synthase 3
TAIR Aliases: CSY3
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Gene
AT4G20350 | locus:2128600 | AT4G20350 | -
Length: 1911  
Chromosome Location: Chr4: 10988037-10989947
Organism . Short Name: A. thaliana
TAIR Computational Description: oxidoreductase;(source:Araport11)
TAIR Curator Summary: Putative RNA demethylase involved in seed germination, seedling growth and abiotic stress responses.
TAIR Short Description: oxidoreductases
TAIR Aliases: ALKBH6
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Gene
AT3G58750 | locus:2098989 | CSY2 | citrate synthase 2
Length: 3832  
Chromosome Location: Chr3: 21724306-21728137
Organism . Short Name: A. thaliana
TAIR Computational Description: citrate synthase 2;(source:Araport11)
TAIR Curator Summary: Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.
TAIR Short Description: citrate synthase 2
TAIR Aliases: CSY2
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Ontology Term Synonym
Ontology Term Synonym
Name: adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: mature seedling resistance
Type: synonym
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Gene
AT1G30520 | locus:2028165 | AAE14 | acyl-activating enzyme 14
Length: 3383  
Chromosome Location: Chr1: 10810397-10813779
Organism . Short Name: A. thaliana
TAIR Computational Description: acyl-activating enzyme 14;(source:Araport11)
TAIR Curator Summary: Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.
TAIR Short Description: acyl-activating enzyme 14
TAIR Aliases: AAE14
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Gene
AT3G62770 | locus:2081705 | AtATG18a | autophagy 18a
Length: 2634  
Chromosome Location: Chr3: 23218610-23221243
Organism . Short Name: A. thaliana
TAIR Computational Description: Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Required for autophagosome formation during nutrient deprivation and senescence, promotes pexophagy during seedling development.
TAIR Short Description: Transducin/WD40 repeat-like superfamily protein
TAIR Aliases: AtATG18a, ATG18a, PEUP2
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Gene
AT1G18370 | locus:2014069 | HIK | HINKEL
Length: 4929  
Chromosome Location: Chr1: 6319450-6324378
Organism . Short Name: A. thaliana
TAIR Computational Description: ATP binding microtubule motor family protein;(source:Araport11)
TAIR Curator Summary: Encodes a kinesin HINKEL. Required for cytokinesis in pollen. Mutant has cytokinesis defects; seedling lethal.
TAIR Short Description: ATP binding microtubule motor family protein
TAIR Aliases: ATNACK1, HIK, NACK1
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Gene
AT5G28490 | locus:2147494 | LSH1 | LIGHT-DEPENDENT SHORT HYPOCOTYLS 1
Length: 1294  
Chromosome Location: Chr5: 10454388-10455681
Organism . Short Name: A. thaliana
TAIR Computational Description: LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640);(source:Araport11)
TAIR Curator Summary: Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.
TAIR Short Description: Protein of unknown function (DUF640)
TAIR Aliases: LSH1, OBO2
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Gene
AT5G13420 | locus:2181665 | TRA2 | transaldolase 2
Length: 2524  
Chromosome Location: Chr5: 4301792-4304315
Organism . Short Name: A. thaliana
TAIR Computational Description: Aldolase-type TIM barrel family protein;(source:Araport11)
TAIR Curator Summary: Transaldolase which contributes to reactive oxygen species homeostasis in response to Glc during early seedling growth.
TAIR Short Description: Aldolase-type TIM barrel family protein
TAIR Aliases: GSM2, TRA2
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Gene
AT3G57180 | locus:2082558 | BPG2 | BRASSINAZOLE(BRZ) INSENSITIVE PALE GREEN 2
Length: 2594  
Chromosome Location: Chr3: 21163545-21166138
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a chloroplast localized protein YL1/BPG2. Involved in seedling shoot response to salt stress through ABI4.
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: BPG2, YL1
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Protein Domain
IPR006968
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Gene
AT2G18890 | locus:2044420 | AT2G18890 | -
Length: 3214  
Chromosome Location: Chr2: 8183638-8186851
Organism . Short Name: A. thaliana
TAIR Computational Description: Protein kinase superfamily protein;(source:Araport11)
TAIR Curator Summary: RLCK VI_A class kinase which activity is regulated by Rho-of-plants (ROP) GTPases. Controls seedling and plant growth in parallel with gibberrellin.
TAIR Short Description: Protein kinase superfamily protein
TAIR Aliases: RLCK VI_A2
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Protein Domain
IPR044793
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Gene
AT1G54060 | locus:2014445 | ASIL1 | 6B-interacting protein 1-like 1
Length: 1765  
Chromosome Location: Chr1: 20180610-20182374
Organism . Short Name: A. thaliana
TAIR Computational Description: 6B-interacting protein 1-like 1;(source:Araport11)
TAIR Curator Summary: Member of the trihelix DNA binding protein family. Nuclear localized. Involved in repressing seed maturation genes during seed germination and seedling development.
TAIR Short Description: 6B-interacting protein 1-like 1
TAIR Aliases: ASIL1
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Protein Domain
IPR044610
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Gene
AT2G43230 | locus:2041071 | AT2G43230 | -
Length: 2476  
Chromosome Location: Chr2: 17966251-17968726
Organism . Short Name: A. thaliana
TAIR Computational Description: Protein kinase superfamily protein;(source:Araport11)
TAIR Curator Summary: Member of cytosolic ABA receptor kinases; interacts with ABA receptors RCAR11-14. Positively regulates germination, seedling architecture and root growth in response to ABA.
TAIR Short Description: Protein kinase superfamily protein
TAIR Aliases: CARK6
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Gene
AT3G62910 | locus:2099137 | APG3 | ALBINO AND PALE GREEN
Length: 3077  
Chromosome Location: Chr3: 23257404-23260480
Organism . Short Name: A. thaliana
TAIR Computational Description: Peptide chain release factor 1;(source:Araport11)
TAIR Curator Summary: Encodes a plastid-localized ribosome release factor 1 that is essential in chloroplast development. Pale green, albino mutant seedlings arrest early in seedling development.
TAIR Short Description: Peptide chain release factor 1
TAIR Aliases: APG3, AtcpRF1, cpRF1
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Gene
AT1G08520 | locus:2201796 | ALB1 | ALBINA 1
Length: 4642  
Chromosome Location: Chr1: 2696381-2701022
Organism . Short Name: A. thaliana
TAIR Computational Description: ALBINA 1;(source:Araport11)
TAIR Curator Summary: Encodes the CHLD subunit of the Mg-chelatase enzyme involved in chlorophyll biosynthesis. Lines carrying recessive mutations of this locus are white and seedling lethal.
TAIR Short Description: ALBINA 1
TAIR Aliases: ALB-1V, ALB1, CHLD, PDE166, V157
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Gene
AT1G65690 | locus:2018531 | AT1G65690 | -
Length: 1749  
Chromosome Location: Chr1: 24431417-24433165
Organism . Short Name: A. thaliana
TAIR Computational Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family;(source:Araport11)
TAIR Curator Summary: Encodes NHL6 (NDR1/HIN1-like 6). Plays an important role in the abiotic stresses-induced ABA signaling and biosynthesis, particularly during seed germination and early seedling development.
TAIR Short Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
TAIR Aliases: NHL6
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Gene
AT5G25250 | locus:2146965 | FLOT1 | flotillin 1
Length: 1957  
Chromosome Location: Chr5: 8749680-8751636
Organism . Short Name: A. thaliana
TAIR Computational Description: SPFH/Band 7/PHB domain-containing membrane-associated protein family;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is involved in a membrane microdomain-dependent, but clathrin-independent, endocytic pathway required for optimal seedling development. The mRNA is cell-to-cell mobile.
TAIR Short Description: SPFH/Band 7/PHB domain-containing membrane-associated protein family
TAIR Aliases: FLOT1
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Ontology Term Synonym
Ontology Term Synonym
Name: up-regulation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: up-regulation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: upregulation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: upregulation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: activation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: activation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: downregulation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: inhibition of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: inhibition of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: down-regulation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: down-regulation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: downregulation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: regulation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: regulation of adult seedling resistance
Type: synonym
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Gene
AT4G29860 | locus:2123869 | EMB2757 | EMBRYO DEFECTIVE 2757
Length: 4113  
Chromosome Location: Chr4: 14601698-14605810
Organism . Short Name: A. thaliana
TAIR Computational Description: Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development.
TAIR Short Description: Transducin/WD40 repeat-like superfamily protein
TAIR Aliases: ALT2, AtDSE1, DSE1, EMB2757, TAN
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Gene
AT1G16060 | locus:2200477 | ADAP | ARIA-interacting double AP2 domain protein
Length: 3426  
Chromosome Location: Chr1: 5508311-5511736
Organism . Short Name: A. thaliana
TAIR Computational Description: ARIA-interacting double AP2 domain protein;(source:Araport11)
TAIR Curator Summary: Encodes ADAP, an AP2-domain protein that interacts with ARIA. ADAP is a positive regulator of the ABA response and is also involved in regulating seedling growth.
TAIR Short Description: ARIA-interacting double AP2 domain protein
TAIR Aliases: ADAP, WRI3
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Gene
AT5G65310 | locus:2168225 | HB5 | homeobox protein 5
Length: 2797  
Chromosome Location: Chr5: 26101818-26104614
Organism . Short Name: A. thaliana
TAIR Computational Description: homeobox protein 5;(source:Araport11)
TAIR Curator Summary: Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment.
TAIR Short Description: homeobox protein 5
TAIR Aliases: ATHB-5, ATHB5, HB5
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Gene
AT5G55310 | locus:2173862 | TOP1BETA | DNA topoisomerase 1 beta
Length: 5030  
Chromosome Location: Chr5: 22430105-22435134
Organism . Short Name: A. thaliana
TAIR Computational Description: DNA topoisomerase 1 beta;(source:Araport11)
TAIR Curator Summary: Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.
TAIR Short Description: DNA topoisomerase 1 beta
TAIR Aliases: TOP1, TOP1BETA
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Protein Domain
IPR044299
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Protein Domain
IPR044274
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Gene
AT1G20780 | locus:2030462 | SAUL1 | senescence-associated E3 ubiquitin ligase 1
Length: 3822  
Chromosome Location: Chr1: 7217021-7220842
Organism . Short Name: A. thaliana
TAIR Computational Description: senescence-associated E3 ubiquitin ligase 1;(source:Araport11)
TAIR Curator Summary: Encodes a protein containing a U-box and an ARM domain. Homozygous mutant seedlings have a seedling lethal phenotype with widespread cell death lesions throughout the cotyledons and roots.
TAIR Short Description: senescence-associated E3 ubiquitin ligase 1
TAIR Aliases: ATPUB44, PUB44, SAUL1
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Gene
AT2G33150 | locus:2046565 | PKT3 | peroxisomal 3-ketoacyl-CoA thiolase 3
Length: 3923  
Chromosome Location: Chr2: 14047478-14051400
Organism . Short Name: A. thaliana
TAIR Computational Description: peroxisomal 3-ketoacyl-CoA thiolase 3;(source:Araport11)
TAIR Curator Summary: Encodes an organellar (peroxisome, glyoxysome) 3-ketoacyl-CoA thiolase, involved in fatty acid b-oxidation during germination and subsequent seedling growth. Mutants have defects in glyoxysomal fatty acid beta-oxidation. EC2.3.1.16 thiolase.
TAIR Short Description: peroxisomal 3-ketoacyl-CoA thiolase 3
TAIR Aliases: KAT2, PED1, PKT3
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Gene
AT2G36690 | locus:2040575 | AT2G36690 | -
Length: 2472  
Chromosome Location: Chr2: 15379660-15382131
Organism . Short Name: A. thaliana
TAIR Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
TAIR Curator Summary: Protein belonging to the Fe-dependent 2-oxoglutarate dioxygenase superfamily, catalyzes the stereospecific hydration of GA12 to produce DHGA12, negatively regulates ABA sensitivity during germination, phototrophic establishment and seedling development.
TAIR Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
TAIR Aliases: GAS2, GIM2
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Gene
AT1G53330 | locus:2009620 | AT1G53330 | -
 
Length: 2394  
Chromosome Location: Chr1: 19895967-19898360
Organism . Short Name: A. thaliana
TAIR Computational Description: Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
TAIR Curator Summary: encodes a member of the pentatricopeptide repeat (PPR) gene family. T-DNA insertion mutants had a complex phenotypic expression, ranging from embryo lethal to seedling lethal, to just subtle changes.
TAIR Short Description: Pentatricopeptide repeat (PPR) superfamily protein
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Gene
AT2G44340 | locus:2050538 | AT2G44340 | -
Length: 1135  
Chromosome Location: Chr2: 18314188-18315322
Organism . Short Name: A. thaliana
TAIR Computational Description: VQ motif-containing protein;(source:Araport11)
TAIR Curator Summary: VQ18 is an ABA responsive gene and interacts with the ABI5 transcription factor. Along with its paralog VQ26, it is involved in negative regulation of ABA responses during early seedling development.
TAIR Short Description: VQ motif-containing protein
TAIR Aliases: VQ18
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Gene
AT3G52380 | locus:2079874 | CP33 | chloroplast RNA-binding protein 33
Length: 1701  
Chromosome Location: Chr3: 19421397-19423097
Organism . Short Name: A. thaliana
TAIR Computational Description: chloroplast RNA-binding protein 33;(source:Araport11)
TAIR Curator Summary: Encodes a chloroplast RNA-binding protein that stabilizes chloroplast RNAs as evidenced by analyses of transcript accumulation in null mutants. Essential for seedling development (albino, strongly retarded growth even on sucrose-containing medium).
TAIR Short Description: chloroplast RNA-binding protein 33
TAIR Aliases: CP33A, PDE322
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Gene
AT3G60090 | locus:2101457 | AT3G60090 | -
Length: 967  
Chromosome Location: Chr3: 22190782-22191748
Organism . Short Name: A. thaliana
TAIR Computational Description: VQ motif-containing protein;(source:Araport11)
TAIR Curator Summary: VQ26 is an ABA responsive gene and interacts with the ABI5 transcription factor. Along with its paralog VQ18, it is involved in negative regulation of ABA responses during early seedling development.
TAIR Short Description: VQ motif-containing protein
TAIR Aliases: VQ26
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Gene
AT5G02310 | locus:2180147 | PRT6 | proteolysis 6
Length: 9075  
Chromosome Location: Chr5: 473868-482942
Organism . Short Name: A. thaliana
TAIR Computational Description: proteolysis 6;(source:Araport11)
TAIR Curator Summary: Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. The mRNA is cell-to-cell mobile.
TAIR Short Description: proteolysis 6
TAIR Aliases: GED1, PRT6
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Ontology Term Synonym
Ontology Term Synonym
Name: positive regulation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: positive regulation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: up regulation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: up regulation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: negative regulation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: negative regulation of mature seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: down regulation of adult seedling resistance
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: down regulation of mature seedling resistance
Type: synonym
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Gene
AT1G21270 | locus:2014912 | WAK2 | wall-associated kinase 2
Length: 3735  
Chromosome Location: Chr1: 7444749-7448483
Organism . Short Name: A. thaliana
TAIR Computational Description: wall-associated kinase 2;(source:Araport11)
TAIR Curator Summary: cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.
TAIR Short Description: wall-associated kinase 2
TAIR Aliases: WAK2
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Gene
AT3G50500 | locus:2098755 | SNRK2.2 | SNF1-related protein kinase 2.2
Length: 2731  
Chromosome Location: Chr3: 18741444-18744174
Organism . Short Name: A. thaliana
TAIR Computational Description: SNF1-related protein kinase 2.2;(source:Araport11)
TAIR Curator Summary: encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.
TAIR Short Description: SNF1-related protein kinase 2.2
TAIR Aliases: SNRK2-2, SNRK2.2, SPK-2-2, SRK2D
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GO Term
GO:0090644 | age-related resistance
Description: An innate immune response that is positively correlated with host plant development. As a plant develops, its innate resistance to pathogenic infections increases. The mechanisms involved in age-related resistance differ in nature or in aspects of regulation from the hypersensitive response (HR), systemic acquired resistance (SAR), or induced systemic resistance (ISR).
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Gene
AT1G32490 | locus:2033723 | ESP3 | ENHANCED SILENCING PHENOTYPE 3
Length: 7783  
Chromosome Location: Chr1: 11742006-11749788
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA helicase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing. Involved in ABI4-regulated ABA signaling under high glucose condition in early seedling growth.
TAIR Short Description: RNA helicase family protein
TAIR Aliases: EMB2733, ESP3, GSM1, RSW12
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Gene
AT5G39990 | locus:2178047 | AT5G39990 | -
Length: 2571  
Chromosome Location: Chr5: 16004253-16006823
Organism . Short Name: A. thaliana
TAIR Computational Description: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein;(source:Araport11)
TAIR Curator Summary: Encodes GlcAT14A, a beta-glucuronosyltransferase involved in the biosynthesis of type II arabinogalactan. The protein was localized to the Golgi apparatus when transiently expressed in Nicotiana benthamiana. Plays a role in cell elongation during seedling growth.
TAIR Short Description: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
TAIR Aliases: GlcAT14A
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Gene
AT5G05700 | locus:2166454 | ATE1 | arginine-tRNA protein transferase 1
Length: 3062  
Chromosome Location: Chr5: 1712670-1715731
Organism . Short Name: A. thaliana
TAIR Computational Description: arginine-tRNA protein transferase 1;(source:Araport11)
TAIR Curator Summary: Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence and altered responses to pathogens.
TAIR Short Description: arginine-tRNA protein transferase 1
TAIR Aliases: ATATE1, ATE1, DLS1
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Gene
AT3G11240 | locus:2074718 | ATE2 | arginine-tRNA protein transferase 2
Length: 2717  
Chromosome Location: Chr3: 3518472-3521188
Organism . Short Name: A. thaliana
TAIR Computational Description: arginine-tRNA protein transferase 2;(source:Araport11)
TAIR Curator Summary: Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. ATE2 has also been show to be involved in the response to pathogens.
TAIR Short Description: arginine-tRNA protein transferase 2
TAIR Aliases: ATATE2, ATE2
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Gene
AT3G61140 | locus:2098851 | FUS6 | FUSCA 6
Length: 3975  
Chromosome Location: Chr3: 22626167-22630141
Organism . Short Name: A. thaliana
TAIR Computational Description: COP9 signalosome complex subunit 1;(source:Araport11)
TAIR Curator Summary: Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defective during embryogenesis and exhibit limited seedling development.
TAIR Short Description: 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain
TAIR Aliases: AtCSN1, ATFUS6, ATSK31, COP11, CSN1, EMB78, FUS6, SK31
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Gene
AT1G23320 | locus:2028010 | TAR1 | tryptophan aminotransferase related 1
Length: 1928  
Chromosome Location: Chr1: 8273423-8275350
Organism . Short Name: A. thaliana
TAIR Computational Description: tryptophan aminotransferase related 1;(source:Araport11)
TAIR Curator Summary: Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. This gene appears to be expressed at a very low level during seedling development. Triple mutant analyses implicate this gene in embryonic development.
TAIR Short Description: tryptophan aminotransferase related 1
TAIR Aliases: TAR1
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Gene
AT4G34220 | locus:2124296 | AT4G34220 | -
Length: 2996  
Chromosome Location: Chr4: 16381473-16384468
Organism . Short Name: A. thaliana
TAIR Computational Description: Leucine-rich repeat protein kinase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a receptor like kinase involved in ABA-mediated seedling development and drought tolerance.RDK1 is an atypical or pseudokinase and has no phosphorylation activity. Its expression is upregulated in response to ABA.interacts with ABI1 and other PP2C phosphatases.
TAIR Short Description: Leucine-rich repeat protein kinase family protein
TAIR Aliases: RDK1
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Gene
AT5G66880 | locus:2174999 | SNRK2.3 | sucrose nonfermenting 1(SNF1)-related protein kinase 2.3
Length: 2670  
Chromosome Location: Chr5: 26710302-26712971
Organism . Short Name: A. thaliana
TAIR Computational Description: sucrose nonfermenting 1(SNF1)-related protein kinase 2.3;(source:Araport11)
TAIR Curator Summary: encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth. The mRNA is cell-to-cell mobile.
TAIR Short Description: sucrose nonfermenting 1(SNF1)-related protein kinase 2.3
TAIR Aliases: SNRK2-3, SNRK2.3, SRK2I
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Gene
AT1G56190 | locus:2205215 | AT1G56190 | -
Length: 2548  
Chromosome Location: Chr1: 21028137-21030684
Organism . Short Name: A. thaliana
TAIR Computational Description: Phosphoglycerate kinase family protein;(source:Araport11)
TAIR Curator Summary: One of a pair of plastid localized phosphoglycerate kinases involved in galactolipid biosynthesis. Functions redundantly with AT3g12780 (PGK1) in the chloroplast in the biosynthesis of thylakoid membrane galactolipids. Double mutants are photosynthetically incompetent, plants are albino and seedling lethal.
TAIR Short Description: Phosphoglycerate kinase family protein
TAIR Aliases: cPGK2, PGK2, PGKp2
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Gene
AT4G37470 | locus:2126357 | KAI2 | KARRIKIN INSENSITIVE 2
Length: 1998  
Chromosome Location: Chr4: 17616659-17618656
Organism . Short Name: A. thaliana
TAIR Computational Description: alpha/beta-Hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: HTL belonging to the alpha/beta fold hydrolase superfamily. Mutant and over-expression studies indicates its involvement in seedling de-etiolation process. Involved in the perception of karrikins. Interacts with MAX2 and together targets SMAX1 for polyubiquitination and degradation. Important for cotyledon expansion.
TAIR Short Description: alpha/beta-Hydrolases superfamily protein
TAIR Aliases: KAI2
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Gene
AT3G59220 | locus:2081187 | PRN | pirin
Length: 1978  
Chromosome Location: Chr3: 21893812-21895789
Organism . Short Name: A. thaliana
TAIR Computational Description: pirin;(source:Araport11)
TAIR Curator Summary: encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.
TAIR Short Description: pirin
TAIR Aliases: ATPIRIN1, PRN, PRN1
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Gene
AT2G31190 | locus:2042536 | RUS2 | ROOT UV-B SENSITIVE 2
Length: 2609  
Chromosome Location: Chr2: 13291191-13293799
Organism . Short Name: A. thaliana
TAIR Computational Description: root UVB sensitive protein (Protein of unknown function, DUF647);(source:Araport11)
TAIR Curator Summary: Encodes RUS2 (root UVB sensitive2), a DUF647-containing protein that is homologous to the RUS1 protein. RUS2 works with RUS1 in a root UV-B sensing pathway that plays a vital role in Arabidopsis early seedling morphogenesis and development. Required for auxin polar transport.
TAIR Short Description: Protein of unknown function, DUF647
TAIR Aliases: RUS2, WXR1
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Gene
AT5G25760 | locus:2145269 | PEX4 | peroxin4
Length: 1715  
Chromosome Location: Chr5: 8967655-8969369
Organism . Short Name: A. thaliana
TAIR Computational Description: peroxin4;(source:Araport11)
TAIR Curator Summary: mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.
TAIR Short Description: peroxin4
TAIR Aliases: APEM7, PEX4, UBC21
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Gene
AT5G11460 | locus:2144246 | AT5G11460 | -
Length: 2444  
Chromosome Location: Chr5: 3656582-3659025
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein (DUF581);(source:Araport11)
TAIR Curator Summary: FCS like zinc finger 10 is induced during energy starvation through SnRK1 signaling. Mutants accumulate more SnRK1alpha1 which results in the inhibition of seedling growth under favorable growth conditions. Increased SnRK1 activity in the mutant also results in the downregulation of TOR signaling (DOI:10.1111/tpj.13854).
TAIR Short Description: Protein of unknown function (DUF581)
TAIR Aliases: FLZ10
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Gene
AT1G78020 | locus:2029421 | AT1G78020 | -
Length: 1231  
Chromosome Location: Chr1: 29338530-29339760
Organism . Short Name: A. thaliana
TAIR Computational Description: senescence-associated family protein, putative (DUF581);(source:Araport11)
TAIR Curator Summary: FCS like zinc finger 6 is induced during energy starvation through SnRK1 signaling. Mutants accumulate more SnRK1alpha1 which results in the inhibition of seedling growth under favorable growth conditions. Increased SnRK1 activity in the mutant also results in the downregulation of TOR signaling (DOI:10.1111/tpj.13854).
TAIR Short Description: Protein of unknown function (DUF581)
TAIR Aliases: FLZ6
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Protein Domain
IPR045021
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Gene
AT1G06310 | locus:2202275 | ACX6 | acyl-CoA oxidase 6
Length: 3746  
Chromosome Location: Chr1: 1926652-1930397
Organism . Short Name: A. thaliana
TAIR Computational Description: acyl-CoA oxidase 6;(source:Araport11)
TAIR Curator Summary: Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo.
TAIR Short Description: acyl-CoA oxidase 6
TAIR Aliases: ACX6
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Gene
AT5G41560 | locus:2160502 | AT5G41560 | -
Length: 1561  
Chromosome Location: Chr5: 16621197-16622757
Organism . Short Name: A. thaliana
TAIR Computational Description: DET1 complexing ubiquitin ligase;(source:Araport11)
TAIR Curator Summary: Encodes a substrate receptor for CRL4-CDD complexes that provides substrate specificity for CRL4 by interacting with ubiquitination targets. By its interaction and regulation of levels of PYL8 through proteasomal degradation, it negatively regulates ABA-mediated developmental responses, including inhibition of seed germination, seedling establishment, and root growth
TAIR Short Description: NULL
TAIR Aliases: DDA1
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Gene
AT5G61270 | locus:2163163 | PIF7 | phytochrome-interacting factor7
Length: 2275  
Chromosome Location: Chr5: 24638491-24640765
Organism . Short Name: A. thaliana
TAIR Computational Description: phytochrome-interacting factor7;(source:Araport11)
TAIR Curator Summary: Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light–absorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.
TAIR Short Description: phytochrome-interacting factor7
TAIR Aliases: PIF7
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mRNA
AT3G10420.2
Length: 2691  
Chromosome Location: Chr3: 3238996-3242599
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mRNA
AT3G10420.1
Length: 2538  
Chromosome Location: Chr3: 3239180-3242537
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Gene
AT5G57710 | locus:2172585 | AT5G57710 | -
Length: 4211  
Chromosome Location: Chr5: 23384255-23388465
Organism . Short Name: A. thaliana
TAIR Computational Description: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: SMAX1 (SUPPRESSOR OF MAX2 1) is a member of an eight-gene family in Arabidopsis that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance. SMAX1 is an important component of KAR/SL signaling during seed germination and seedling growth, but is not necessary for all MAX2-dependent responses. The mRNA is cell-to-cell mobile.
TAIR Short Description: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: SMAX1
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Gene
AT5G65280 | locus:2171800 | GCL1 | GCR2-like 1
Length: 2685  
Chromosome Location: Chr5: 26085593-26088277
Organism . Short Name: A. thaliana
TAIR Computational Description: GCR2-like 1;(source:Araport11)
TAIR Curator Summary: Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.
TAIR Short Description: GCR2-like 1
TAIR Aliases: GCL1
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Protein Domain
IPR044246
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Gene
AT1G49040 | locus:2028481 | SCD1 | STOMATAL CYTOKINESIS-DEFECTIVE 1
Length: 9846  
Chromosome Location: Chr1: 18139174-18149019
Organism . Short Name: A. thaliana
TAIR Computational Description: stomatal cytokinesis defective / SCD1 protein (SCD1);(source:Araport11)
TAIR Curator Summary: Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.
TAIR Short Description: stomatal cytokinesis defective / SCD1 protein (SCD1)
TAIR Aliases: SCD1
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Gene
AT1G16610 | locus:2017948 | SR45 | arginine/serine-rich 45
Length: 3379  
Chromosome Location: Chr1: 5675495-5678873
Organism . Short Name: A. thaliana
TAIR Computational Description: arginine/serine-rich 45;(source:Araport11)
TAIR Curator Summary: Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.
TAIR Short Description: arginine/serine-rich 45
TAIR Aliases: AtSR45, RNPS1, SR45
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Gene
AT5G01340 | locus:2179152 | mSFC1 | mitochondrial succinate-fumarate carrier 1
Length: 1809  
Chromosome Location: Chr5: 143055-144863
Organism . Short Name: A. thaliana
TAIR Computational Description: Mitochondrial substrate carrier family protein;(source:Araport11)
TAIR Curator Summary: Transports citrate, isocitrate and aconitate, succinate and fumarate. Catalyzes a fast counter-exchange transport as well as a low uniport of substrates, exhibits a higher transport affinity for tricarboxylates than dicarboxylates. Might be involved in storage oil mobilization 78 at early stages of seedling growth and in nitrogen assimilation in root tissue by 79 catalyzing citrate/isocitrate or citrate/succinate exchanges.
TAIR Short Description: Mitochondrial substrate carrier family protein
TAIR Aliases: AtmSFC1, mSFC1, SFC1
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Gene
AT4G11110 | locus:2136133 | SPA2 | SPA1-related 2
Length: 5621  
Chromosome Location: Chr4: 6771605-6777225
Organism . Short Name: A. thaliana
TAIR Computational Description: SPA1-related 2;(source:Araport11)
TAIR Curator Summary: Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants.
TAIR Short Description: SPA1-related 2
TAIR Aliases: SPA2
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Gene
AT5G18340 | locus:2146213 | AT5G18340 | -
Length: 1989  
Chromosome Location: Chr5: 6070346-6072334
Organism . Short Name: A. thaliana
TAIR Computational Description: ARM repeat superfamily protein;(source:Araport11)
TAIR Curator Summary: One of three tandemly located, paralogous plant U-box proteins. Mutants show increased sensitivity to water stress. E3 ligase which acts as a regulator in the heat response signaling pathway. Over-expressing AtPUB48 could induce the expression of the heat-related genes (HSP101, HSP70, HSP25.3, HSFA2, and ZAT12). Enhances plant resistance to heat stress during seed germination and seedling growth.
TAIR Short Description: ARM repeat superfamily protein
TAIR Aliases: PUB48
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Publication
23773129
First Author: Scaffidi A
Title: Carlactone-independent seedling morphogenesis in Arabidopsis.
Year: 2013
Journal: Plant J
Volume: 76
Pages: 1-9
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Gene
AT4G16340 | locus:2130484 | SPK1 | SPIKE1
Length: 13445  
Chromosome Location: Chr4: 9228185-9241629
Organism . Short Name: A. thaliana
TAIR Computational Description: guanyl-nucleotide exchange factors;(source:Araport11)
TAIR Curator Summary: Encodes SPIKE1 (SPK1), the lone DOCK family guanine nucleotide exchange factor (GEF) in Arabidopsis. SPK1 is a peripheral membrane protein that accumulates at, and promotes the formation of, a specialized domain of the endoplasmic reticulum (ER) termed the ER exit site (ERES). SPK1 promotes polarized growth and cell-cell adhesion in the leaf epidermis. Mutant has seedling lethal; cotyledon, leaf-shape, trichome defects.
TAIR Short Description: guanyl-nucleotide exchange factors;GTPase binding;GTP binding
TAIR Aliases: SPK1
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Gene
AT5G62790 | locus:2170773 | DXR | 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Length: 3345  
Chromosome Location: Chr5: 25214125-25217469
Organism . Short Name: A. thaliana
TAIR Computational Description: 1-deoxy-D-xylulose 5-phosphate reductoisomerase;(source:Araport11)
TAIR Curator Summary: 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype.
TAIR Short Description: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
TAIR Aliases: DXR, PDE129
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Protein Domain
IPR045319
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