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Search results 1 to 100 out of 611 for roots

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0.025s
Type Details Score
Gene
Length: 3999  
Chromosome Location: Chr1: 8951162-8955160
Organism . Short Name: A. thaliana
TAIR Computational Description: ARM repeat superfamily protein;(source:Araport11)
TAIR Curator Summary: One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem
TAIR Short Description: ARM repeat superfamily protein
TAIR Aliases: ATB BETA BETA, EER1, RCN1, REGA
Gene
Length: 2518  
Chromosome Location: Chr3: 17869515-17872032
Organism . Short Name: A. thaliana
TAIR Computational Description: Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a pentatricopeptide repeat protein implicated in splicing of intron 1 of mitochondrial nad7 transcripts.
TAIR Short Description: Pentatricopeptide repeat (PPR) superfamily protein
TAIR Aliases: BIR6
Gene
Length: 1481  
Chromosome Location: Chr1: 4747186-4748666
Organism . Short Name: A. thaliana
TAIR Computational Description: KTI12-like, chromatin associated protein;(source:Araport11)
TAIR Curator Summary: Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots. Mutants also have no ncm5U (5-carbamoylmethyluridine).
TAIR Short Description: calmodulin binding;purine nucleotide binding
TAIR Aliases: AtKTI12, DRL1
Gene  
Length: 1912  
Chromosome Location: Chr1: 2771620-2773531
Organism . Short Name: A. thaliana
TAIR Computational Description: F-box family protein;(source:Araport11)
TAIR Curator Summary: F-box protein that is induced in roots by drought stress.
TAIR Short Description: F-box family protein
Gene
Length: 2141  
Chromosome Location: Chr2: 12643917-12646057
Organism . Short Name: A. thaliana
TAIR Computational Description: tubulin beta-7 chain;(source:Araport11)
TAIR Curator Summary: Encodes a beta-tubulin that is expressed in leaves, roots and flowers.
TAIR Short Description: tubulin beta-7 chain
TAIR Aliases: TBB7, TUB7
Gene
Length: 2819  
Chromosome Location: Chr4: 9395621-9398439
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphatidylserine decarboxylase 1;(source:Araport11)
TAIR Curator Summary: Encodes a mitochondrial phosphatidylserine decarboxylase. Expressed mainly in roots and flowers.
TAIR Short Description: phosphatidylserine decarboxylase 1
TAIR Aliases: PSD1
Gene
Length: 1455  
Chromosome Location: Chr5: 21090956-21092410
Organism . Short Name: A. thaliana
TAIR Computational Description: Peroxidase superfamily protein;(source:Araport11)
TAIR Curator Summary: encodes peroxidase involved in the lignification of tracheary elements (TE) in roots
TAIR Short Description: Peroxidase superfamily protein
TAIR Aliases: Prx66
GO Term
Description: The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot.
Gene
Length: 1408  
Chromosome Location: Chr3: 22937170-22938577
Organism . Short Name: A. thaliana
TAIR Computational Description: Cation efflux family protein;(source:Araport11)
TAIR Curator Summary: Member of Zinc transporter (ZAT) family. Expressed in roots under low zinc conditions.
TAIR Short Description: Cation efflux family protein
TAIR Aliases: ATMTPA1, MTP2, MTPA1
Gene
Length: 2806  
Chromosome Location: Chr3: 8453903-8456708
Organism . Short Name: A. thaliana
TAIR Computational Description: MATE efflux family protein;(source:Araport11)
TAIR Curator Summary: Member of the multidrug and toxic compound extrusion (MATE) family, protects roots from inhibitory compounds.
TAIR Short Description: MATE efflux family protein
TAIR Aliases: ALF5
Gene
Length: 3135  
Chromosome Location: Chr3: 13032306-13035440
Organism . Short Name: A. thaliana
TAIR Computational Description: Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
TAIR Curator Summary: Terpene synthase. Expressed in roots and has low enzyme activity in vitro. Products include dolabellane type diterpenes.
TAIR Short Description: Terpenoid cyclases/Protein prenyltransferases superfamily protein
TAIR Aliases: TPS9
Gene
Length: 740  
Chromosome Location: Chr4: 681862-682601
Organism . Short Name: A. thaliana
TAIR Computational Description: serine protease inhibitor, Kazal-type family protein;(source:Araport11)
TAIR Curator Summary: Encodes a putative Kazal-type serine proteinase inhibitor that is highly expressed in seeds, mature roots and flowers.
TAIR Short Description: serine protease inhibitor, Kazal-type family protein
TAIR Aliases: AtKPI-2, KPI-2
Protein Domain
Gene
Length: 5470  
Chromosome Location: Chr4: 7796782-7802251
Organism . Short Name: A. thaliana
TAIR Computational Description: high affinity K+ transporter 5;(source:Araport11)
TAIR Curator Summary: Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.
TAIR Short Description: high affinity K+ transporter 5
TAIR Aliases: ATHAK5, HAK5
Gene
Length: 6001  
Chromosome Location: Chr4: 5500313-5506313
Organism . Short Name: A. thaliana
TAIR Computational Description: sulfate transporter 1;(source:Araport11)
TAIR Curator Summary: Encodes a high-af®nity sulfate transporter. Contains STAS domain. Expressed in roots and guard cells. Up-regulated by sulfur deficiency.
TAIR Short Description: sulphate transporter 1;1
TAIR Aliases: SULTR1;1
Gene
Length: 1718  
Chromosome Location: Chr1: 1529767-1531484
Organism . Short Name: A. thaliana
TAIR Computational Description: Peroxidase superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. The mRNA is cell-to-cell mobile.
TAIR Short Description: Peroxidase superfamily protein
TAIR Aliases: PER3, RCI3, RCI3A
Gene  
Length: 829  
Chromosome Location: Chr3: 22139492-22140320
Organism . Short Name: A. thaliana
TAIR Computational Description: defensin-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a defensin-like (DEFL) family protein that is expressed in roots and downregulated in syncytium formed during nematode infection.
TAIR Short Description: NULL
Gene
Length: 1695  
Chromosome Location: Chr5: 24081868-24083562
Organism . Short Name: A. thaliana
TAIR Computational Description: myb domain protein 59;(source:Araport11)
TAIR Curator Summary: Encodes a putative transcription factor (MYB59). In roots it is involved in K+/NO3- transport and expression of the NPF7.3 transporter.
TAIR Short Description: myb domain protein 59
TAIR Aliases: ATMYB59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59
Gene
Length: 3442  
Chromosome Location: Chr2: 405762-409203
Organism . Short Name: A. thaliana
TAIR Computational Description: DNAse I-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes an inositol polyphosphate phosphatidylinositol 5-phosphatase that is expressed in roots and is involved in mediating salt tolerance through endocytosis.
TAIR Short Description: DNAse I-like superfamily protein
TAIR Aliases: t5ptase9
Gene
Length: 542  
Chromosome Location: Chr3: 3050989-3051530
Organism . Short Name: A. thaliana
TAIR Computational Description: induced by phosphate starvation1;(source:Araport11)
TAIR Curator Summary: Encodes a gene product whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.
TAIR Short Description: induced by phosphate starvation1
TAIR Aliases: ATIPS1, IPS1
Gene
Length: 2381  
Chromosome Location: Chr4: 160643-163023
Organism . Short Name: A. thaliana
TAIR Computational Description: cytochrome P450, family 86, subfamily A, polypeptide 2;(source:Araport11)
TAIR Curator Summary: Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.
TAIR Short Description: cytochrome P450, family 86, subfamily A, polypeptide 2
TAIR Aliases: ATT1, CYP86A2
Gene
Length: 3838  
Chromosome Location: Chr5: 3601513-3605350
Organism . Short Name: A. thaliana
TAIR Computational Description: mitotic-like cyclin 3B from Arabidopsi;(source:Araport11)
TAIR Curator Summary: mitotic-like cyclin, core cell cycle gene that is expressed only in roots (RT_PCR), portions with mitotic activity only (whole mount in situ).
TAIR Short Description: mitotic-like cyclin 3B from Arabidopsis
TAIR Aliases: CYC2BAT, CYC3B, CYCA2;2
Gene
Length: 1921  
Chromosome Location: Chr1: 29099839-29101759
Organism . Short Name: A. thaliana
TAIR Computational Description: NAC domain containing protein 32;(source:Araport11)
TAIR Curator Summary: NAC domain transcriptional regulator that is induced by ROS in roots where it regulates the expression of downstream genes such as MYB30.
TAIR Short Description: NAC domain containing protein 32
TAIR Aliases: anac032, NAC032, NAC32
Gene
Length: 1851  
Chromosome Location: Chr3: 6089381-6091231
Organism . Short Name: A. thaliana
TAIR Computational Description: purple acid phosphatase 17;(source:Araport11)
TAIR Curator Summary: Expression is upregulated in the shoot of cax1/cax3 mutant and is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.
TAIR Short Description: purple acid phosphatase 17
TAIR Aliases: ATACP5, ATPAP17, PAP17
Gene
Length: 2209  
Chromosome Location: Chr2: 106621-108829
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphatidic acid phosphatase 1;(source:Araport11)
TAIR Curator Summary: Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
TAIR Short Description: phosphatidic acid phosphatase 1
TAIR Aliases: ATLPP1, ATPAP1, LPP1, PAP1
Protein Domain
Protein Domain
Protein Domain
Gene
Length: 1857  
Chromosome Location: Chr1: 11546160-11548016
Organism . Short Name: A. thaliana
TAIR Computational Description: pinoresinol reductase 1;(source:Araport11)
TAIR Curator Summary: Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.
TAIR Short Description: pinoresinol reductase 1
TAIR Aliases: ATPRR1, PRR1
Gene
Length: 1940  
Chromosome Location: Chr5: 17164093-17166032
Organism . Short Name: A. thaliana
TAIR Computational Description: dihydroflavonol 4-reductase;(source:Araport11)
TAIR Curator Summary: dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. Not expressed in roots (qRT-PCR). The mRNA is cell-to-cell mobile.
TAIR Short Description: dihydroflavonol 4-reductase
TAIR Aliases: DFR, M318, TT3
GO Term
Description: Growth or movement in a sessile organism toward or away from water, as of the roots of a plant.
Gene
Length: 5304  
Chromosome Location: Chr1: 325316-330619
Organism . Short Name: A. thaliana
TAIR Computational Description: armadillo repeat kinesin 2;(source:Araport11)
TAIR Curator Summary: Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.
TAIR Short Description: armadillo repeat kinesin 2
TAIR Aliases: ARK2, AtKINUb
Gene
Length: 1600  
Chromosome Location: Chr2: 10933005-10934604
Organism . Short Name: A. thaliana
TAIR Computational Description: molybdate transporter 1;(source:Araport11)
TAIR Curator Summary: Encodes a high-affinity molybdate transporter. Mutant has reduced concentrations of molybdate in roots and shoots, and reduced shoot and root length when growing on Mo-limited medium.
TAIR Short Description: molybdate transporter 1
TAIR Aliases: MOT1
Gene
Length: 1579  
Chromosome Location: Chr1: 28131447-28133025
Organism . Short Name: A. thaliana
TAIR Computational Description: response regulator 15;(source:Araport11)
TAIR Curator Summary: Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.
TAIR Short Description: response regulator 15
TAIR Aliases: ARR15
Gene
Length: 1060  
Chromosome Location: Chr3: 7140294-7141353
Organism . Short Name: A. thaliana
TAIR Computational Description: glycine-rich protein 5;(source:Araport11)
TAIR Curator Summary: encodes a glycine-rich protein that is expressed more abundantly in immature seed pods than in stems and leaves. Expression is not detected in roots or flowers.
TAIR Short Description: glycine-rich protein 5
TAIR Aliases: ATGRP-5, ATGRP5, GRP-5, GRP5
Gene
Length: 2082  
Chromosome Location: Chr5: 8042853-8044934
Organism . Short Name: A. thaliana
TAIR Computational Description: tubulin beta 8;(source:Araport11)
TAIR Curator Summary: beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. The mRNA is cell-to-cell mobile.
TAIR Short Description: tubulin beta 8
TAIR Aliases: TUB8
Protein Domain
Gene
Length: 1715  
Chromosome Location: Chr2: 17367492-17369206
Organism . Short Name: A. thaliana
TAIR Computational Description: MIZU-KUSSEI-like protein (Protein of unknown function, DUF617);(source:Araport11)
TAIR Curator Summary: Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.
TAIR Short Description: Protein of unknown function, DUF617
TAIR Aliases: MIZ1
Gene
Length: 3575  
Chromosome Location: Chr5: 86543-90117
Organism . Short Name: A. thaliana
TAIR Computational Description: sulfoquinovosyldiacylglycerol 2;(source:Araport11)
TAIR Curator Summary: Encodes a UDP-sulfoquinovose:DAG sulfoquinovosyltransferase that is involved in sulfolipid biosynthesis and whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.
TAIR Short Description: sulfoquinovosyldiacylglycerol 2
TAIR Aliases: SQD2
Gene
Length: 3657  
Chromosome Location: Chr1: 23527570-23531226
Organism . Short Name: A. thaliana
TAIR Computational Description: heavy metal atpase 5;(source:Araport11)
TAIR Curator Summary: The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed.
TAIR Short Description: heavy metal atpase 5
TAIR Aliases: AtHMP12, HMA5
Gene
Length: 1882  
Chromosome Location: Chr1: 9259432-9261313
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin A10;(source:Araport11)
TAIR Curator Summary: Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin A10
TAIR Aliases: AT-EXP10, ATEXP10, ATEXPA10, ATHEXP ALPHA 1.1, EXP10, EXPA10
Gene
Length: 1915  
Chromosome Location: Chr2: 16543832-16545746
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin A4;(source:Araport11)
TAIR Curator Summary: putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin A4
TAIR Aliases: ATEXP4, ATEXPA4, ATHEXP ALPHA 1.6, EXPA4, XPA4
Gene
Length: 2779  
Chromosome Location: Chr4: 16905579-16908357
Organism . Short Name: A. thaliana
TAIR Computational Description: serine acetyltransferase 3;(source:Araport11)
TAIR Curator Summary: Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced in both roots and shoots under sulfur-starved conditions.
TAIR Short Description: serine acetyltransferase 3;2
TAIR Aliases: ATSERAT3;2, SERAT3;2
Gene
Length: 3112  
Chromosome Location: Chr1: 26394492-26397603
Organism . Short Name: A. thaliana
TAIR Computational Description: Terpenoid cyclases/Protein prenyltransferases superfamily protein;(source:Araport11)
TAIR Curator Summary: Terpene synthase. Expressed in roots and has low enzyme activity in vitro. Products include dolabellane type diterpenes. Sesterterpene synthase which produces various sesterpne backbones via type-B cyclization mechanism.
TAIR Short Description: Terpenoid cyclases/Protein prenyltransferases superfamily protein
TAIR Aliases: TPS6
Gene
Length: 1498  
Chromosome Location: Chr3: 20574752-20576249
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin A16;(source:Araport11)
TAIR Curator Summary: expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin A16
TAIR Aliases: ATEXP16, ATEXPA16, ATHEXP ALPHA 1.7, EXP16, EXPA16
Gene
Length: 2252  
Chromosome Location: Chr5: 6553703-6555954
Organism . Short Name: A. thaliana
TAIR Computational Description: RING/U-box superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a C3HC4-type RING finger E3 ubiquitin ligase of the RING/U-box superfamily whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.
TAIR Short Description: RING/U-box superfamily protein
TAIR Aliases: C3HC4
Gene
Length: 1301  
Chromosome Location: Chr5: 22711141-22712441
Organism . Short Name: A. thaliana
TAIR Computational Description: nicotianamine synthase 2;(source:Araport11)
TAIR Curator Summary: Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.
TAIR Short Description: nicotianamine synthase 2
TAIR Aliases: ATNAS2, NAS2
Gene
Length: 2459  
Chromosome Location: Chr2: 12431338-12433796
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin A6;(source:Araport11)
TAIR Curator Summary: Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin A6
TAIR Aliases: ATEXP6, ATEXPA6, ATHEXP ALPHA 1.8, EXPA6
Gene
Length: 3886  
Chromosome Location: Chr2: 18814660-18818545
Organism . Short Name: A. thaliana
TAIR Computational Description: calcineurin B subunit-like protein;(source:Araport11)
TAIR Curator Summary: Encodes an acyl-CoA: lysophosphatidylethanolamine acyltransferase with 20:0-CoA being the best acyl donor. Mutations adversely affect the growth of plants and result in decreased lipid content in roots and seeds.
TAIR Short Description: calcineurin B subunit-related
TAIR Aliases: AtLPEAT2, LPEAT2
Gene
Length: 2761  
Chromosome Location: Chr4: 7945683-7948443
Organism . Short Name: A. thaliana
TAIR Computational Description: pinoresinol reductase 2;(source:Araport11)
TAIR Curator Summary: Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol. The mRNA is cell-to-cell mobile.
TAIR Short Description: pinoresinol reductase 2
TAIR Aliases: ATPRR2, PRR2
Gene
Length: 4417  
Chromosome Location: Chr4: 12903180-12907596
Organism . Short Name: A. thaliana
TAIR Computational Description: U-box domain-containing protein kinase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a U-box domain-containing E3 ubiquitin ligase with central Ser/Thr protein kinase domain whose expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots.
TAIR Short Description: U-box domain-containing protein kinase family protein
TAIR Aliases: PUB35
Gene
Length: 2500  
Chromosome Location: Chr4: 13999625-14002124
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin B3;(source:Araport11)
TAIR Curator Summary: putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin B3
TAIR Aliases: ATEXPB3, ATHEXP BETA 1.6, EXPB3
Gene
Length: 1218  
Chromosome Location: Chr4: 17922756-17923973
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin A20;(source:Araport11)
TAIR Curator Summary: expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin A20
TAIR Aliases: ATEXP20, ATEXPA20, ATHEXP ALPHA 1.23, EXP20, EXPA20
Gene
Length: 4624  
Chromosome Location: Chr3: 7926728-7931351
Organism . Short Name: A. thaliana
TAIR Computational Description: PLAT/LH2 domain-containing lipoxygenase family protein;(source:Araport11)
TAIR Curator Summary: Encodes lipoxygenase5 (LOX5). LOX5 activity in roots facilitates green peach aphid colonization of Arabidopsis foliage by promoting green peach aphid feeding from sieve element and water consumption from xylem.
TAIR Short Description: PLAT/LH2 domain-containing lipoxygenase family protein
TAIR Aliases: ATLOX5, LOX5
Gene
Length: 3116  
Chromosome Location: Chr1: 30412149-30415264
Organism . Short Name: A. thaliana
TAIR Computational Description: Phospholipid/glycerol acyltransferase family protein;(source:Araport11)
TAIR Curator Summary: Encodes an acyl-CoA: lysophosphatidylethanolamine acyltransferase with 16:0-CoA being the best acyl donor. Mutations adversely affect the growth of plants and result in decreased lipid content in roots and seeds.
TAIR Short Description: Phospholipid/glycerol acyltransferase family protein
TAIR Aliases: AtLPEAT1, LPEAT1
Gene
Length: 4386  
Chromosome Location: Chr5: 3490788-3495173
Organism . Short Name: A. thaliana
TAIR Computational Description: aberrant root formation protein;(source:Araport11)
TAIR Curator Summary: alf4-1 mutation blocks initiation of lateral roots as well as callus formation. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.
TAIR Short Description: aberrant lateral root formation 4
TAIR Aliases: ALF4
Gene
Length: 1813  
Chromosome Location: Chr1: 26141726-26143538
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin A1;(source:Araport11)
TAIR Curator Summary: Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin A1
TAIR Aliases: AT-EXP1, ATEXP1, ATEXPA1, ATHEXP ALPHA 1.2, EXP1, EXPA1
Gene
Length: 2617  
Chromosome Location: Chr2: 15787523-15790139
Organism . Short Name: A. thaliana
TAIR Computational Description: Barwin-like endoglucanases superfamily protein;(source:Araport11)
TAIR Curator Summary: member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: Barwin-like endoglucanases superfamily protein
TAIR Aliases: ATEXP3, ATEXPA3, ATHEXP ALPHA 1.9, EXP3, EXPA3
Gene
Length: 1915  
Chromosome Location: Chr2: 16948791-16950705
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin A8;(source:Araport11)
TAIR Curator Summary: member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin A8
TAIR Aliases: ATEXP8, ATEXPA8, ATHEXP ALPHA 1.11, EXP8, EXPA8
Gene
Length: 1866  
Chromosome Location: Chr2: 916806-918671
Organism . Short Name: A. thaliana
TAIR Computational Description: expansin A15;(source:Araport11)
TAIR Curator Summary: member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
TAIR Short Description: expansin A15
TAIR Aliases: ATEXP15, ATEXPA15, ATHEXP ALPHA 1.3, EXP15, EXPA15
Gene
Length: 2115  
Chromosome Location: Chr5: 6064170-6066284
Organism . Short Name: A. thaliana
TAIR Computational Description: ARM repeat superfamily protein;(source:Araport11)
TAIR Curator Summary: One of three tandemly located, paralogous plant U-box proteins. Mutants show increased sensitivity to water stress.Expression in roots is enhanced by auxin and to a lesser extent ABA and cytokinin treatment.
TAIR Short Description: ARM repeat superfamily protein
TAIR Aliases: PUB46
Gene
Length: 1374  
Chromosome Location: Chr5: 6802282-6803655
Organism . Short Name: A. thaliana
TAIR Computational Description: SPX domain-containing protein 1;(source:Araport11)
TAIR Curator Summary: Expression is upregulated in the shoot of cax1/cax3 mutant. Additionally, its expression is responsive to both phosphate (Pi) and phosphite (Phi) in both roots and shoots. The mRNA is cell-to-cell mobile.
TAIR Short Description: SPX domain gene 1
TAIR Aliases: ATSPX1, SPX1
Gene
Length: 1905  
Chromosome Location: Chr5: 25408821-25410725
Organism . Short Name: A. thaliana
TAIR Computational Description: cytochrome P450, family 94, subfamily B, polypeptide 1;(source:Araport11)
TAIR Curator Summary: AtWRKY33 regulates root apoplastic barrier formation by controlling AtCYP94B1 leading to increased salt tolerance of Arabidopsis plants. Regulation by WRKY33 to control apoplastic barrier formation in roots to confer salt tolerance.
TAIR Short Description: cytochrome P450, family 94, subfamily B, polypeptide 1
TAIR Aliases: CYP94B1
Gene
Length: 9082  
Chromosome Location: Chr1: 22011305-22020386
Organism . Short Name: A. thaliana
TAIR Computational Description: aminophospholipid ATPase 3;(source:Araport11)
TAIR Curator Summary: Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower. The mRNA is cell-to-cell mobile.
TAIR Short Description: aminophospholipid ATPase 3
TAIR Aliases: ALA3
Gene
Length: 1380  
Chromosome Location: Chr3: 5443950-5445329
Organism . Short Name: A. thaliana
TAIR Computational Description: pyridoxine biosynthesis 1.2;(source:Araport11)
TAIR Curator Summary: Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation.
TAIR Short Description: pyridoxine biosynthesis 1.2
TAIR Aliases: A37, ATPDX1.2, PDX1.2
Protein
Organism . Name: Arabidopsis thaliana
Length: 587  
Gene
Length: 2474  
Chromosome Location: Chr5: 4547202-4549675
Organism . Short Name: A. thaliana
TAIR Computational Description: regulator of nonsense transcript protein;(source:Araport11)
TAIR Curator Summary: LAZY1 is required for gravitropic response. Mutants have abnormal shoot angles and abnormal root gravitropism. LZY1 affects the redistribution of auxin in response to gravity in shoots and roots via an unknown mechanism.
TAIR Short Description: NULL
TAIR Aliases: AtLAZY1, LAZY1
Gene
Length: 2745  
Chromosome Location: Chr5: 22219224-22221968
Organism . Short Name: A. thaliana
TAIR Computational Description: galacturonosyltransferase 12;(source:Araport11)
TAIR Curator Summary: Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).
TAIR Short Description: galacturonosyltransferase 12
TAIR Aliases: GAUT12, IRX8, LGT6
Gene
Length: 1511  
Chromosome Location: Chr1: 27544969-27546479
Organism . Short Name: A. thaliana
TAIR Computational Description: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1;(source:Araport11)
TAIR Curator Summary: encodes a bifunctional 3, 5-epimerase-4-reductase in L-fucose synthesis and converts GDP-D-mannose to GDP-L-fucose in vitro along with MUR1 (GDP-D-mannose 4,6-dehydratase). It is expressed in all tissues examined, but most abundantly in roots and flowers.
TAIR Short Description: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1
TAIR Aliases: ATFX, GER1
Gene
Length: 1611  
Chromosome Location: Chr5: 26634275-26635885
Organism . Short Name: A. thaliana
TAIR Computational Description: homeobox 53;(source:Araport11)
TAIR Curator Summary: Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.
TAIR Short Description: homeobox 53
TAIR Aliases: ATHB53, HB-8, HB53
Gene
Length: 1380  
Chromosome Location: Chr1: 4604688-4606067
Organism . Short Name: A. thaliana
TAIR Computational Description: sulfotransferase 4B;(source:Araport11)
TAIR Curator Summary: Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiments show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.
TAIR Short Description: sulfotransferase 4B
TAIR Aliases: ATST4B, ST4B
Gene
Length: 1281  
Chromosome Location: Chr1: 4606500-4607780
Organism . Short Name: A. thaliana
TAIR Computational Description: sulfotransferase 4C;(source:Araport11)
TAIR Curator Summary: Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment.
TAIR Short Description: sulfotransferase 4C
TAIR Aliases: ATST4C, ST4C
Gene
Length: 2449  
Chromosome Location: Chr5: 7144829-7147277
Organism . Short Name: A. thaliana
TAIR Computational Description: F-box protein 2;(source:Araport11)
TAIR Curator Summary: Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.
TAIR Short Description: F-box protein 2
TAIR Aliases: FBX2
Gene
Length: 936  
Chromosome Location: Chr5: 894582-895517
Organism . Short Name: A. thaliana
TAIR Computational Description: expressed in response to phosphate starvation protein;(source:Araport11)
TAIR Curator Summary: Expressed in roots in response to phosphate starvation, this response is enhanced by the presence of IAA. Additionally, its expression is responsive to both phosphate (Pi) and phosphite (Phi) in shoots. The mRNA is cell-to-cell mobile.
TAIR Short Description: NULL
TAIR Aliases: AT4, ATIPS2
Gene
Length: 2978  
Chromosome Location: Chr3: 17472297-17475274
Organism . Short Name: A. thaliana
TAIR Computational Description: putative glycerol-3-phosphate transporter 1;(source:Araport11)
TAIR Curator Summary: Encodes a Pi starvation-responsive protein AtPS3. A member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1), AT4G25220(G3Pp2), AT1G30560(G3Pp3), AT4G17550(G3Pp4) and AT2G13100(G3Pp5). Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.
TAIR Short Description: phosphate starvation-induced gene 3
TAIR Aliases: AtG3Pp1, ATPS3, G3Pp1, PS3
Gene
Length: 3560  
Chromosome Location: Chr5: 6942955-6946514
Organism . Short Name: A. thaliana
TAIR Computational Description: alpha/beta-Hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a de-S-acylation enzyme which specifically reduces protein S-acylation levels of five immunity-related proteins. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).
TAIR Short Description: alpha/beta-Hydrolases superfamily protein
TAIR Aliases: ABAPT11, WAV2
Ontology Term
Description: Protein involved in nodulation, the formation of nitrogen-fixing nodules on roots of both leguminous plants and the Parasponia genus
Gene
Length: 2645  
Chromosome Location: Chr2: 18912095-18914739
Organism . Short Name: A. thaliana
TAIR Computational Description: cytochrome P450, family 86, subfamily A, polypeptide 8;(source:Araport11)
TAIR Curator Summary: Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.Mutant seeds have reduced seed longevity, higher tetrazolium salt uptake and reduction, and reduced lipid polyester barriers (PMID:32519347).
TAIR Short Description: cytochrome P450, family 86, subfamily A, polypeptide 8
TAIR Aliases: CYP86A8, LCR
Protein Domain
Gene  
Length: 1496  
Chromosome Location: Chr1: 19760001-19761496
Organism . Short Name: A. thaliana
TAIR Computational Description: Cytochrome C oxidase copper chaperone (COX17);(source:Araport11)
TAIR Curator Summary: encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.
TAIR Short Description: Cytochrome C oxidase copper chaperone (COX17)
Gene
Length: 3187  
Chromosome Location: Chr5: 24511152-24514338
Organism . Short Name: A. thaliana
TAIR Computational Description: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family;(source:Araport11)
TAIR Curator Summary: Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
TAIR Short Description: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
TAIR Aliases: COB
Gene
Length: 2511  
Chromosome Location: Chr2: 15673410-15675920
Organism . Short Name: A. thaliana
TAIR Computational Description: ABC-2 type transporter family protein;(source:Araport11)
TAIR Curator Summary: Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).
TAIR Short Description: ABC-2 type transporter family protein
TAIR Aliases: ABCG2
Gene
Length: 2667  
Chromosome Location: Chr2: 16430085-16432751
Organism . Short Name: A. thaliana
TAIR Computational Description: ABC-2 type transporter family protein;(source:Araport11)
TAIR Curator Summary: Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).
TAIR Short Description: ABC-2 type transporter family protein
TAIR Aliases: ABCG1, WBC1
Gene
Length: 2909  
Chromosome Location: Chr5: 1855995-1858903
Organism . Short Name: A. thaliana
TAIR Computational Description: sorting nexin 1;(source:Araport11)
TAIR Curator Summary: Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.
TAIR Short Description: sorting nexin 1
TAIR Aliases: ATSNX1, SNX1
Gene
Length: 2595  
Chromosome Location: Chr1: 27273968-27276562
Organism . Short Name: A. thaliana
TAIR Computational Description: jasmonate-zim-domain protein 6;(source:Araport11)
TAIR Curator Summary: JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.
TAIR Short Description: jasmonate-zim-domain protein 6
TAIR Aliases: JAZ6, TIFY11B
Gene
Length: 2208  
Chromosome Location: Chr1: 27288900-27291107
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: DRO1 is a member of the IGT gene family and has a unknown function . It is expressed in roots and involved in leaf root architecture, specifically the orientation of lateral root angles. Involved in determining lateral root branch angle.
TAIR Short Description: NULL
TAIR Aliases: AtNGR2, DRO1, LAZY4
Gene
Length: 2728  
Chromosome Location: Chr3: 20416183-20418910
Organism . Short Name: A. thaliana
TAIR Computational Description: ABC-2 type transporter family protein;(source:Araport11)
TAIR Curator Summary: Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).
TAIR Short Description: ABC-2 type transporter family protein
TAIR Aliases: ABCG16, AtABCG16, ATJAT1, JAT1
Protein Domain
Protein Domain
Gene
Length: 5836  
Chromosome Location: Chr2: 12264928-12270763
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Mutants have radially swollen roots but do not exhibit defects in abundance or orientation of cortical microtubules, nor are microfibrils reduced. Cellulose synthesis is also unchanged with respect to wild type. There is a disruption in the normal pattern of cell wall placement.
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: RSW7
Gene
Length: 4400  
Chromosome Location: Chr4: 11388827-11393226
Organism . Short Name: A. thaliana
TAIR Computational Description: receptor kinase 3;(source:Araport11)
TAIR Curator Summary: encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.
TAIR Short Description: receptor kinase 3
TAIR Aliases: ARK3, RK3
Gene
Length: 14681  
Chromosome Location: Chr1: 21587060-21601740
Organism . Short Name: A. thaliana
TAIR Computational Description: HYPERSENSITIVE TO PI STARVATION 4;(source:Araport11)
TAIR Curator Summary: SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots.
TAIR Short Description: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
TAIR Aliases: HPS4, SAB
Protein Domain
Gene
Length: 5556  
Chromosome Location: Chr2: 14277558-14283113
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphate 2;(source:Araport11)
TAIR Curator Summary: Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response and mediates degradation of PHO1 and PHT1s at endomembrane. Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots. The mRNA is cell-to-cell mobile.
TAIR Short Description: phosphate 2
TAIR Aliases: ATUBC24, PHO2, UBC24
Gene
Length: 1455  
Chromosome Location: Chr4: 14825757-14827211
Organism . Short Name: A. thaliana
TAIR Computational Description: xyloglucan endotransglucosylase/hydrolase 18;(source:Araport11)
TAIR Curator Summary: Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.
TAIR Short Description: xyloglucan endotransglucosylase/hydrolase 18
TAIR Aliases: ATXTH18, XTH18
Gene
Length: 1453  
Chromosome Location: Chr1: 24257054-24258506
Organism . Short Name: A. thaliana
TAIR Computational Description: xyloglucan endotransglucosylase/hydrolase 17;(source:Araport11)
TAIR Curator Summary: Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.
TAIR Short Description: xyloglucan endotransglucosylase/hydrolase 17
TAIR Aliases: ATXTH17, XTH17
Gene
Length: 833  
Chromosome Location: Chr1: 25809298-25810130
Organism . Short Name: A. thaliana
TAIR Computational Description: arabinogalactan protein 19;(source:Araport11)
TAIR Curator Summary: AGP19 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP18, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers. Non-consensus splice site at the intron:exon boundary (AT:exon)
TAIR Short Description: arabinogalactan protein 19
TAIR Aliases: AGP19, ATAGP19
Protein Domain
Protein Domain
Gene
Length: 3293  
Chromosome Location: Chr5: 24571095-24574387
Organism . Short Name: A. thaliana
TAIR Computational Description: histone deacetylase of the RPD3/HDA1 superfamily 18;(source:Araport11)
TAIR Curator Summary: Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Class II RPD3-like family HDAC member which controls negative responses to salinity stress. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.
TAIR Short Description: histone deacetylase of the RPD3/HDA1 superfamily 18
TAIR Aliases: ATHDA18, HDA18