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Search results 1 to 100 out of 9058 for protospacer adjacent motif

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Type Details Score
Protein Domain
IPR040555
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Protein Domain
IPR040656
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Protein Domain
IPR028629
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Protein Domain
IPR017589
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Gene
AT5G15150 | locus:2150901 | HB-3 | homeobox 3
Length: 2278  
Chromosome Location: Chr5: 4913699-4915976
Organism . Short Name: A. thaliana
TAIR Computational Description: homeobox 3;(source:Araport11)
TAIR Curator Summary: homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.
TAIR Short Description: homeobox 3
TAIR Aliases: ATHB-3, ATHB3, HAT7, HB-3
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Gene
AT1G12210 | locus:2201986 | RFL1 | RPS5-like 1
Length: 3701  
Chromosome Location: Chr1: 4140216-4143916
Organism . Short Name: A. thaliana
TAIR Computational Description: RPS5-like 1;(source:Araport11)
TAIR Curator Summary: RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.
TAIR Short Description: RPS5-like 1
TAIR Aliases: RFL1
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Ontology Term Synonym
Ontology Term Synonym
Name: nuclear envelope adjacent to NPC
Type: synonym
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Publication
11773444
First Author: Ko L
Title: Ser-884 adjacent to the LXXLL motif of coactivator TRBP defines selectivity for ERs and TRs.
Year: 2002
Journal: Mol Endocrinol
Volume: 16
Pages: 128-40
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The CLV3/ESR (CLE) motif is the functional region of the CLV3 protein and it acts independently of the adjacent sequences.
Organism: A. thaliana
Gene: CLV3
PubMed Id: 16751438
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Gene
AT3G04950 | locus:2114794 | AT3G04950 | -
 
Length: 1889  
Chromosome Location: Chr3: 1371636-1373524
Organism . Short Name: A. thaliana
TAIR Computational Description: SEC-C motif protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT3G05810 | locus:2074424 | AT3G05810 | -
 
Length: 1691  
Chromosome Location: Chr3: 1730966-1732656
Organism . Short Name: A. thaliana
TAIR Computational Description: IGR motif protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT4G30740 | locus:2131974 | AT4G30740 | -
 
Length: 619  
Chromosome Location: Chr4: 14979246-14979864
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT3G29130 | locus:2094637 | AT3G29130 | -
 
Length: 4471  
Chromosome Location: Chr3: 11099603-11104073
Organism . Short Name: A. thaliana
TAIR Computational Description: kxDL motif protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT4G02425 | locus:1005716277 | AT4G02425 | -
 
Length: 1770  
Chromosome Location: Chr4: 1067052-1068821
Organism . Short Name: A. thaliana
TAIR Computational Description: LYR motif protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT5G43155 | - | AT5G43155 | -
   
Length: 781  
Chromosome Location: Chr5: 17328460-17329240
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein;(source:Araport11)
TAIR Short Description: NULL
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Gene
AT5G15720 | locus:2143156 | GLIP7 | GDSL-motif lipase 7
Length: 1962  
Chromosome Location: Chr5: 5124525-5126486
Organism . Short Name: A. thaliana
TAIR Computational Description: GDSL-motif lipase 7;(source:Araport11)
TAIR Curator Summary: Contains lipase signature motif and GDSL domain.
TAIR Short Description: GDSL-motif lipase 7
TAIR Aliases: GLIP7
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Gene
AT3G14225 | locus:2090785 | GLIP4 | GDSL-motif lipase 4
Length: 1441  
Chromosome Location: Chr3: 4734553-4735993
Organism . Short Name: A. thaliana
TAIR Computational Description: GDSL-motif lipase 4;(source:Araport11)
TAIR Curator Summary: Contains lipase signature motif and GDSL domain.
TAIR Short Description: GDSL-motif lipase 4
TAIR Aliases: GLIP4
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Gene
AT1G53920 | locus:2197014 | GLIP5 | GDSL-motif lipase 5
Length: 2180  
Chromosome Location: Chr1: 20137537-20139716
Organism . Short Name: A. thaliana
TAIR Computational Description: GDSL-motif lipase 5;(source:Araport11)
TAIR Curator Summary: Contains lipase signature motif and GDSL domain.
TAIR Short Description: GDSL-motif lipase 5
TAIR Aliases: GLIP5
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Gene
AT1G61215 | locus:1006230673 | BRD4 | bromodomain 4
Length: 2975  
Chromosome Location: Chr1: 22572609-22575583
Organism . Short Name: A. thaliana
TAIR Computational Description: bromodomain 4;(source:Araport11)
TAIR Curator Summary: Bromodomain protein with a DNA binding motif
TAIR Short Description: bromodomain 4
TAIR Aliases: BRD4
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Gene
AT1G71120 | locus:2026286 | GLIP6 | GDSL-motif lipase/hydrolase 6
Length: 1416  
Chromosome Location: Chr1: 26821072-26822487
Organism . Short Name: A. thaliana
TAIR Computational Description: GDSL-motif lipase/hydrolase 6;(source:Araport11)
TAIR Curator Summary: Contains lipase signature motif and GDSL domain.
TAIR Short Description: GDSL-motif lipase/hydrolase 6
TAIR Aliases: GLIP6
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Gene
AT5G19780 | locus:2183154 | TUA5 | tubulin alpha-5
Length: 2142  
Chromosome Location: Chr5: 6687030-6689171
Organism . Short Name: A. thaliana
TAIR Computational Description: tubulin alpha-5;(source:Araport11)
TAIR Curator Summary: Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication. The mRNA is cell-to-cell mobile.
TAIR Short Description: tubulin alpha-5
TAIR Aliases: TUA5
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Gene
AT1G79760 | locus:2017839 | DTA4 | downstream target of AGL15-4
Length: 1515  
Chromosome Location: Chr1: 30011981-30013495
Organism . Short Name: A. thaliana
TAIR Computational Description: downstream target of AGL15-4;(source:Araport11)
TAIR Curator Summary: Identified as target of the AGL15 binding motif CArG.
TAIR Short Description: downstream target of AGL15-4
TAIR Aliases: DTA4
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Gene
AT5G59990 | locus:2168083 | AT5G59990 | -
 
Length: 2268  
Chromosome Location: Chr5: 24150934-24153201
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT5G14370 | locus:2145698 | AT5G14370 | -
 
Length: 2035  
Chromosome Location: Chr5: 4631891-4633925
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT1G04500 | locus:2018344 | AT1G04500 | -
 
Length: 3129  
Chromosome Location: Chr1: 1221411-1224539
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT1G05290 | locus:2207155 | AT1G05290 | -
Length: 1411  
Chromosome Location: Chr1: 1539152-1540562
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: Member of the CONSTANS-Like protein family which is a putative regulator of reactive oxygen species homeostasis.
TAIR Short Description: CCT motif family protein
TAIR Aliases: OMG1
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Gene
AT1G07050 | locus:2007482 | AT1G07050 | -
Length: 1687  
Chromosome Location: Chr1: 2163575-2165261
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: FITNESS encodes a protein with a single CCT domain and belongs to the CCT motif family genes (CMF). FITNESS acts upstream JUB1 thereby controlling H2O2 levels. FITNESS has a role in cellular redox homeostasis controlling H2O2 levels, due to changes in enzymes, metabolites and transcripts related to ROS detoxification.
TAIR Short Description: CCT motif family protein
TAIR Aliases: FITNESS
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Gene
AT2G20616 | locus:2827368 | AT2G20616 | -
 
Length: 1190  
Chromosome Location: Chr2: 8887116-8888305
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein (DUF566);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Family of unknown function (DUF566)
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Gene
AT2G20815 | locus:505006260 | QWRF3 | QWRF domain containing 3
Length: 2895  
Chromosome Location: Chr2: 8959255-8962149
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein (DUF566);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Family of unknown function (DUF566)
TAIR Aliases: QWRF3
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Gene
AT2G24070 | locus:2061416 | QWRF4 | QWRF domain containing 4
Length: 4195  
Chromosome Location: Chr2: 10231300-10235494
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein (DUF566);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Family of unknown function (DUF566)
TAIR Aliases: QWRF4
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Gene
AT2G32310 | locus:2062617 | AT2G32310 | -
 
Length: 1981  
Chromosome Location: Chr2: 13724394-13726374
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT2G33350 | locus:2051099 | AT2G33350 | -
 
Length: 3366  
Chromosome Location: Chr2: 14133810-14137175
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT2G46670 | locus:2062749 | AT2G46670 | -
 
Length: 877  
Chromosome Location: Chr2: 19164357-19165233
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT4G25190 | locus:2122639 | QWRF7 | QWRF domain containing 7
Length: 1974  
Chromosome Location: Chr4: 12914183-12916156
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein (DUF566);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Family of unknown function (DUF566)
TAIR Aliases: QWRF7
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Gene
AT4G25370 | locus:2138048 | AT4G25370 | -
Length: 2279  
Chromosome Location: Chr4: 12972685-12974963
Organism . Short Name: A. thaliana
TAIR Computational Description: Double Clp-N motif protein;(source:Araport11)
TAIR Curator Summary: Subunit of the plastid CLP chaperone-protease system.
TAIR Short Description: Double Clp-N motif protein
TAIR Aliases: ClpT1
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Gene
AT4G25990 | locus:2120850 | CIL | -
Length: 3040  
Chromosome Location: Chr4: 13191085-13194124
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes
TAIR Short Description: CCT motif family protein
TAIR Aliases: CIL
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Gene
AT4G27900 | locus:2132902 | AT4G27900 | -
 
Length: 2602  
Chromosome Location: Chr4: 13890472-13893073
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT4G30710 | locus:2131949 | QWRF8 | QWRF domain containing 8
Length: 4621  
Chromosome Location: Chr4: 14965143-14969763
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein (DUF566);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Family of unknown function (DUF566)
TAIR Aliases: AUG8, QWRF8
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Gene
AT1G49890 | locus:2007233 | QWRF2 | QWRF domain containing 2
Length: 3788  
Chromosome Location: Chr1: 18470046-18473833
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein (DUF566);(source:Araport11)
TAIR Curator Summary: Together with QWRF1 redundantly modulates cortical microtubule arrangement in floral organ growth and fertility.
TAIR Short Description: Family of unknown function (DUF566)
TAIR Aliases: QWRF2
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Gene
AT1G63820 | locus:2195518 | AT1G63820 | -
 
Length: 2096  
Chromosome Location: Chr1: 23682278-23684373
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT3G60000 | locus:2080522 | QWRF6 | QWRF domain containing 6
Length: 2053  
Chromosome Location: Chr3: 22160815-22162867
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein (DUF566);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Family of unknown function (DUF566)
TAIR Aliases: QWRF6
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Gene
AT4G12060 | locus:2118066 | AT4G12060 | -
Length: 2023  
Chromosome Location: Chr4: 7227971-7229993
Organism . Short Name: A. thaliana
TAIR Computational Description: Double Clp-N motif protein;(source:Araport11)
TAIR Curator Summary: Protein involved in chloroplast proteostasis which was highly enriched in the CLPC1-TRAP.
TAIR Short Description: Double Clp-N motif protein
TAIR Aliases: ClpT2
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Gene
AT5G41380 | locus:2177911 | AT5G41380 | -
 
Length: 2455  
Chromosome Location: Chr5: 16561278-16563732
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: CCT motif family protein
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Gene
AT5G43160 | locus:2167756 | QWRF9 | QWRF domain containing 9
Length: 2078  
Chromosome Location: Chr5: 17329275-17331352
Organism . Short Name: A. thaliana
TAIR Computational Description: QWRF motif protein (DUF566);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Family of unknown function (DUF566)
TAIR Aliases: QWRF9
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Gene
AT5G53420 | locus:2178441 | AT5G53420 | -
Length: 2372  
Chromosome Location: Chr5: 21673432-21675803
Organism . Short Name: A. thaliana
TAIR Computational Description: CCT motif family protein;(source:Araport11)
TAIR Curator Summary: Member of ASML2 family of CCT domain proteins.There is a preferential accumulation of RNA isoforms CCT101.1 and CCT101.2 in response to N-treatment, each isoform has different targets.
TAIR Short Description: CCT motif family protein
TAIR Aliases: CCT101
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Gene
AT5G10800 | locus:2183775 | AT5G10800 | -
 
Length: 5900  
Chromosome Location: Chr5: 3412654-3418553
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: RNA recognition motif (RRM)-containing protein
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Gene
AT1G32470 | locus:2033802 | AT1G32470 | -
Length: 1096  
Chromosome Location: Chr1: 11739304-11740399
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
TAIR Aliases: GDC-H1
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Gene
AT2G35120 | locus:2063464 | AT2G35120 | -
 
Length: 1768  
Chromosome Location: Chr2: 14805639-14807406
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
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Gene
AT2G45430 | locus:2050946 | AHL22 | AT-hook motif nuclear-localized protein 22
Length: 1769  
Chromosome Location: Chr2: 18727504-18729272
Organism . Short Name: A. thaliana
TAIR Computational Description: AT-hook motif nuclear-localized protein 22;(source:Araport11)
TAIR Curator Summary: Encodes a nuclear localized AT hook domain containing protein that can bind AT rich DNA in vitro. Overexpression of the gene results in delayed flowering. Is likely to act redundantly with AHL18, AHL27 and AHL29 in the regulation of flowering. It is also involved in both photo- and skotomorphogenesis.
TAIR Short Description: AT-hook motif nuclear-localized protein 22
TAIR Aliases: AHL22
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Gene
AT3G04570 | locus:2084958 | AHL19 | AT-hook motif nuclear-localized protein 19
Length: 1706  
Chromosome Location: Chr3: 1230746-1232451
Organism . Short Name: A. thaliana
TAIR Computational Description: AT-hook motif nuclear-localized protein 19;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: AT-hook motif nuclear-localized protein 19
TAIR Aliases: AHL19
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Gene
AT4G12640 | locus:2135605 | AT4G12640 | -
Length: 5339  
Chromosome Location: Chr4: 7462532-7467870
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the Split ends (Spen) protein family that is characterized by an N-terminal domain, with one or more RNA recognition motifs and a SPOC domain. Knockout and overexpression mutants show no apparent changes in growth, development and flowering time under standard growth conditions.
TAIR Short Description: RNA recognition motif (RRM)-containing protein
TAIR Aliases: AtSPEN2
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Gene
AT4G14465 | locus:505006460 | AHL20 | AT-hook motif nuclear-localized protein 20
Length: 1815  
Chromosome Location: Chr4: 8320538-8322352
Organism . Short Name: A. thaliana
TAIR Computational Description: AT-hook motif nuclear-localized protein 20;(source:Araport11)
TAIR Curator Summary: AT-hook protein. Overexpression results in early flowering in short and long days.
TAIR Short Description: AT-hook motif nuclear-localized protein 20
TAIR Aliases: AHL20
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Gene
AT1G42990 | locus:2009874 | BZIP60 | basic region/leucine zipper motif 60
Length: 1741  
Chromosome Location: Chr1: 16135723-16137463
Organism . Short Name: A. thaliana
TAIR Computational Description: basic region/leucine zipper motif 60;(source:Araport11)
TAIR Curator Summary: bZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. bZIP60 mRNA is upregulated by the addition of ER stress inducers, tunicamycin (inhibitor of N-linked glycosylation), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress, bZIP60 mRNA is spliced by IRE1A and IRE1B to produce bZIP60-S, an active transcription factor without the transmembrane domain. bZIP60-U, a product of unspliced form of bZIP60 mRNA, is localized at the ER membrane and bZIP60-S is localized in the nucleus.
TAIR Short Description: basic region/leucine zipper motif 60
TAIR Aliases: ATBZIP60, BZIP60
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Gene
AT1G52670 | locus:2035149 | AT1G52670 | -
Length: 2681  
Chromosome Location: Chr1: 19614931-19617611
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
TAIR Aliases: BADC2, BLP1
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Gene
AT1G75980 | locus:2204375 | AT1G75980 | -
 
Length: 1865  
Chromosome Location: Chr1: 28522554-28524418
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
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Gene
AT3G15690 | locus:2093237 | AT3G15690 | -
Length: 3206  
Chromosome Location: Chr3: 5316916-5320121
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
TAIR Aliases: BADC3, BLP2
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Gene
AT3G23900 | locus:2076121 | AT3G23900 | -
Length: 4585  
Chromosome Location: Chr3: 8631482-8636066
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: Physically interacts with, and promotes canonical splicing of, transcripts encoding defense signaling proteins, including the key negative regulator of pattern recognition receptor signaling complexes, CALCIUM-DEPENDENT PROTEIN KINASE 28 (CPK28). Upon immune activation by Plant Elicitor Peptides (Peps), IRR is dephosphorylated, disrupting interaction with CPK28 transcripts and resulting in accumulation of an alternative splice variant encoding a truncated CPK28 protein with impaired kinase activity and diminished function as a negative regulator.
TAIR Short Description: RNA recognition motif (RRM)-containing protein
TAIR Aliases: IRR
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Gene
AT3G47120 | locus:2075676 | AT3G47120 | -
Length: 1956  
Chromosome Location: Chr3: 17350898-17352853
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: GDS1is a member of the C3H-type zinc finger family of proteins. Mutants display growth defects due to reduced cell number and size.
TAIR Short Description: RNA recognition motif (RRM)-containing protein
TAIR Aliases: GDS1
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Gene
AT3G52870 | locus:2085161 | AT3G52870 | -
 
Length: 2762  
Chromosome Location: Chr3: 19593073-19595834
Organism . Short Name: A. thaliana
TAIR Computational Description: IQ calmodulin-binding motif family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: IQ calmodulin-binding motif family protein
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Gene
AT1G79880 | locus:2017809 | La2 | La protein 2
Length: 2381  
Chromosome Location: Chr1: 30046028-30048408
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: RNA recognition motif (RRM)-containing protein
TAIR Aliases: AtLa2, La2
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Gene
AT3G60870 | locus:2101916 | AHL18 | AT-hook motif nuclear-localized protein 18
Length: 1443  
Chromosome Location: Chr3: 22492811-22494253
Organism . Short Name: A. thaliana
TAIR Computational Description: AT-hook motif nuclear-localized protein 18;(source:Araport11)
TAIR Curator Summary: Encodes an AT hook domain containing protein that, when overexpressed, delays flowering. Los s of function mutations have defects in primary and lateral root development.
TAIR Short Description: AT-hook motif nuclear-localized protein 18
TAIR Aliases: AHL18
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Gene
AT3G62420 | locus:2096024 | BZIP53 | basic region/leucine zipper motif 53
Length: 1265  
Chromosome Location: Chr3: 23091586-23092850
Organism . Short Name: A. thaliana
TAIR Computational Description: basic region/leucine zipper motif 53;(source:Araport11)
TAIR Curator Summary: Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene.
TAIR Short Description: basic region/leucine zipper motif 53
TAIR Aliases: ATBZIP53, BZIP53
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Gene
AT2G17770 | locus:2827931 | BZIP27 | basic region/leucine zipper motif 27
Length: 1499  
Chromosome Location: Chr2: 7722825-7724323
Organism . Short Name: A. thaliana
TAIR Computational Description: basic region/leucine zipper motif 27;(source:Araport11)
TAIR Curator Summary: Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.
TAIR Short Description: basic region/leucine zipper motif 27
TAIR Aliases: ATBZIP27, BZIP27, FDP
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Gene
AT2G19380 | locus:2047685 | AT2G19380 | -
 
Length: 3206  
Chromosome Location: Chr2: 8383807-8387012
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: RNA recognition motif (RRM)-containing protein
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Gene
AT4G12080 | locus:2118091 | AHL1 | AT-hook motif nuclear-localized protein 1
Length: 2476  
Chromosome Location: Chr4: 7239200-7241675
Organism . Short Name: A. thaliana
TAIR Computational Description: AT-hook motif nuclear-localized protein 1;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: AT-hook motif nuclear-localized protein 1
TAIR Aliases: AHL1, ATAHL1
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Gene
AT5G25060 | locus:2179295 | RRC1 | reduced red-light responses in cry1cry2 background 1
Length: 7104  
Chromosome Location: Chr5: 8633114-8640217
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: RNA recognition motif (RRM)-containing protein
TAIR Aliases: RRC1
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Gene
AT1G53990 | locus:2014450 | GLIP3 | GDSL-motif lipase 3
Length: 1737  
Chromosome Location: Chr1: 20151016-20152752
Organism . Short Name: A. thaliana
TAIR Computational Description: GDSL-motif lipase 3;(source:Araport11)
TAIR Curator Summary: Contains lipase signature motif and GDSL domain. The mRNA is cell-to-cell mobile.
TAIR Short Description: GDSL-motif lipase 3
TAIR Aliases: GLIP3
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Gene
AT5G58630 | locus:2178858 | TRM31 | TON1 Recruiting Motif 31
Length: 1345  
Chromosome Location: Chr5: 23696108-23697452
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM31
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Gene
AT1G01695 | locus:4515102489 | TRM33 | TON1 Recruiting Motif 33
Length: 1905  
Chromosome Location: Chr1: 252626-254530
Organism . Short Name: A. thaliana
TAIR Computational Description: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related
TAIR Aliases: TRM33
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Gene
AT1G18620 | locus:2027473 | TRM3 | TON1 Recruiting Motif 3
Length: 4915  
Chromosome Location: Chr1: 6409655-6414569
Organism . Short Name: A. thaliana
TAIR Computational Description: LONGIFOLIA protein;(source:Araport11)
TAIR Curator Summary: Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.
TAIR Short Description: NULL
TAIR Aliases: LNG4, TRM3
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Gene
AT2G20240 | locus:2038982 | TRM17 | TON1 Recruiting Motif 17
Length: 2900  
Chromosome Location: Chr2: 8727626-8730525
Organism . Short Name: A. thaliana
TAIR Computational Description: GPI-anchored adhesin-like protein, putative (DUF3741);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Protein of unknown function (DUF3741)
TAIR Aliases: TRM17
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Gene
AT2G36420 | locus:2044888 | TRM27 | TON1 Recruiting Motif 27
Length: 2987  
Chromosome Location: Chr2: 15286121-15289107
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleolin-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM27
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Gene
AT2G39435 | locus:4515102965 | TRM18 | TON1 Recruiting Motif 18
Length: 2620  
Chromosome Location: Chr2: 16464414-16467033
Organism . Short Name: A. thaliana
TAIR Computational Description: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related
TAIR Aliases: TRM18
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Gene
AT2G45900 | locus:2050684 | TRM13 | TON1 Recruiting Motif 13
Length: 3428  
Chromosome Location: Chr2: 18885751-18889178
Organism . Short Name: A. thaliana
TAIR Computational Description: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related
TAIR Aliases: TRM13
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Gene
AT3G05750 | locus:2074519 | TRM6 | TON1 Recruiting Motif 6
Length: 3881  
Chromosome Location: Chr3: 1703850-1707730
Organism . Short Name: A. thaliana
TAIR Computational Description: serine-rich adhesin for platelets-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.
TAIR Short Description: NULL
TAIR Aliases: TRM6
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Gene
AT4G23020 | locus:2127178 | TRM11 | TON1 Recruiting Motif 11
Length: 2452  
Chromosome Location: Chr4: 12066173-12068624
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM11
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Gene
AT4G25430 | locus:2131794 | TRM23 | TON1 Recruiting Motif 23
Length: 1944  
Chromosome Location: Chr4: 12998361-13000304
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM23
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Gene
AT4G28760 | locus:2117823 | TRM20 | TON1 Recruiting Motif 20
Length: 4591  
Chromosome Location: Chr4: 14207460-14212050
Organism . Short Name: A. thaliana
TAIR Computational Description: methyl-coenzyme M reductase II subunit gamma, putative (DUF3741);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Protein of unknown function (DUF3741)
TAIR Aliases: TRM20
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Gene
AT5G03670 | locus:2144628 | TRM28 | TON1 Recruiting Motif 28
Length: 3094  
Chromosome Location: Chr5: 947146-950239
Organism . Short Name: A. thaliana
TAIR Computational Description: histone-lysine N-methyltransferase SETD1B-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM28
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Gene
AT1G63670 | locus:2026704 | TRM12 | TON1 Recruiting Motif 12
Length: 3423  
Chromosome Location: Chr1: 23607357-23610779
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein (DUF3741);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Protein of unknown function (DUF3741)
TAIR Aliases: TRM12
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Gene
AT1G67040 | locus:2019728 | TRM22 | TON1 Recruiting Motif 22
Length: 3600  
Chromosome Location: Chr1: 25019105-25022704
Organism . Short Name: A. thaliana
TAIR Computational Description: DnaA initiator-associating protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM22
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Gene
AT1G74160 | locus:2037318 | TRM4 | TON1 Recruiting Motif 4
Length: 5526  
Chromosome Location: Chr1: 27885911-27891436
Organism . Short Name: A. thaliana
TAIR Computational Description: LONGIFOLIA protein;(source:Araport11)
TAIR Curator Summary: Member of a small gene family in Arabidopsis. Quadruple mutants in this family display defects in cell elongation.
TAIR Short Description: NULL
TAIR Aliases: LNG3, TRM4
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Gene
AT3G24630 | locus:2093156 | TRM34 | TON1 Recruiting Motif 34
Length: 3055  
Chromosome Location: Chr3: 8987835-8990889
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM34
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Gene
AT3G53540 | locus:2083981 | TRM19 | TON1 Recruiting Motif 19
Length: 4399  
Chromosome Location: Chr3: 19846647-19851045
Organism . Short Name: A. thaliana
TAIR Computational Description: afadin;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM19
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Gene
AT3G58650 | locus:2076431 | TRM7 | TON1 Recruiting Motif 7
Length: 3927  
Chromosome Location: Chr3: 21696072-21699998
Organism . Short Name: A. thaliana
TAIR Computational Description: GPI-anchored adhesin-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division. Its transcription is regulated by the cell cycle and peaks at the G2/M transition.
TAIR Short Description: NULL
TAIR Aliases: TRM7
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Gene
AT3G61380 | locus:2098961 | TRM14 | TON1 Recruiting Motif 14
Length: 3596  
Chromosome Location: Chr3: 22708482-22712077
Organism . Short Name: A. thaliana
TAIR Computational Description: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related
TAIR Aliases: TRM14
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Gene
AT3G63430 | locus:2087413 | TRM5 | TON1 Recruiting Motif 5
Length: 2331  
Chromosome Location: Chr3: 23420145-23422475
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger CCCH domain protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM5
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Gene
AT4G00440 | locus:2126041 | TRM15 | TON1 Recruiting Motif 15
Length: 5055  
Chromosome Location: Chr4: 193528-198582
Organism . Short Name: A. thaliana
TAIR Computational Description: GPI-anchored adhesin-like protein, putative (DUF3741);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Protein of unknown function (DUF3741)
TAIR Aliases: TRM15
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Gene
AT4G00770 | locus:2134553 | TRM9 | TON1 Recruiting Motif 9
Length: 2321  
Chromosome Location: Chr4: 331157-333477
Organism . Short Name: A. thaliana
TAIR Computational Description: DUF4378 domain protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM9
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Gene
AT2G17550 | locus:2053883 | TRM26 | TON1 Recruiting Motif 26
Length: 3707  
Chromosome Location: Chr2: 7634126-7637832
Organism . Short Name: A. thaliana
TAIR Computational Description: RB1-inducible coiled-coil protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM26
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Gene
AT4G11780 | locus:2139737 | TRM10 | TON1 Recruiting Motif 10
Length: 2534  
Chromosome Location: Chr4: 7085879-7088412
Organism . Short Name: A. thaliana
TAIR Computational Description: GAR2-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM10
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Gene
AT5G26910 | locus:2148533 | TRM8 | TON1 Recruiting Motif 8
Length: 4555  
Chromosome Location: Chr5: 9465849-9470403
Organism . Short Name: A. thaliana
TAIR Computational Description: GPI-anchored adhesin-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the TRM superfamily, that plays a role in preprophase band formation during plant cell division and controls the robustness of the orientation of that cell division.
TAIR Short Description: NULL
TAIR Aliases: TRM8
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Gene
AT5G42710 | locus:2165507 | TRM30 | TON1 Recruiting Motif 30
Length: 3480  
Chromosome Location: Chr5: 17125455-17128934
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM30
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Gene
AT5G43880 | locus:2149519 | TRM21 | TON1 Recruiting Motif 21
Length: 4207  
Chromosome Location: Chr5: 17639776-17643982
Organism . Short Name: A. thaliana
TAIR Computational Description: methyl-coenzyme M reductase II subunit gamma, putative (DUF3741);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Protein of unknown function (DUF3741)
TAIR Aliases: TRM21
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Gene
AT5G51850 | locus:2165381 | TRM24 | TON1 Recruiting Motif 24
Length: 2527  
Chromosome Location: Chr5: 21079106-21081632
Organism . Short Name: A. thaliana
TAIR Computational Description: hypothetical protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM24
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Gene
AT5G62170 | locus:2174103 | TRM25 | TON1 Recruiting Motif 25
Length: 2823  
Chromosome Location: Chr5: 24972886-24975708
Organism . Short Name: A. thaliana
TAIR Computational Description: LOW protein: M-phase inducer phosphatase-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
TAIR Aliases: TRM25
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Protein Domain
IPR014847
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Gene
AT3G04590 | locus:2084983 | AT3G04590 | -
Length: 2952  
Chromosome Location: Chr3: 1238853-1241804
Organism . Short Name: A. thaliana
TAIR Computational Description: AT hook motif DNA-binding family protein;(source:Araport11)
TAIR Curator Summary: AHL proteins contain two conserved structural units, the AT-hook motif and DUF296 domain.
TAIR Short Description: AT hook motif DNA-binding family protein
TAIR Aliases: AHL14
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Gene
AT3G58780 | locus:2099029 | SHP1 | SHATTERPROOF 1
Length: 4358  
Chromosome Location: Chr3: 21738160-21742517
Organism . Short Name: A. thaliana
TAIR Computational Description: K-box region and MADS-box transcription factor family protein;(source:Araport11)
TAIR Curator Summary: One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.
TAIR Short Description: K-box region and MADS-box transcription factor family protein
TAIR Aliases: AGL1, SHP1
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Gene
AT5G05740 | locus:2166389 | EGY2 | ethylene-dependent gravitropism-deficient and yellow-green-like 2
Length: 3382  
Chromosome Location: Chr5: 1723687-1727068
Organism . Short Name: A. thaliana
TAIR Computational Description: ethylene-dependent gravitropism-deficient and yellow-green-like 2;(source:Araport11)
TAIR Curator Summary: S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.
TAIR Short Description: ethylene-dependent gravitropism-deficient and yellow-green-like 2
TAIR Aliases: ATEGY2, EGY2
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