Type |
Details |
Score |
Gene |
Length: |
1616
|
Chromosome Location: |
Chr1: 5651268-5652883 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ASYMMETRIC LEAVES 2-like 9;(source:Araport11) |
TAIR Curator Summary: |
NULL |
TAIR Short Description: |
ASYMMETRIC LEAVES 2-like 9 |
TAIR Aliases: |
ASL9, LBD3 |
|
•
•
•
•
•
|
Gene |
Length: |
2957
|
Chromosome Location: |
Chr5: 26705785-26708741 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ASYMMETRIC LEAVES 2-like 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes LOB domain protein whose overexpression results in KNOX gene repression. Overexpression also results in plants with hyponastic leaves, downward pointing flowers and reduced apical dominance. May be involved in the transcriptional regulation of the homeobox gene BP (brevipedicellus) during lateral organ differentiation. Acts together with AS2 in proximal-distal symmetry determination. |
TAIR Short Description: |
ASYMMETRIC LEAVES 2-like 1 |
TAIR Aliases: |
ASL1, LBD36 |
|
•
•
•
•
•
|
Protein |
Organism . Name: |
Arabidopsis thaliana |
Length: |
199
|
|
•
•
•
•
•
|
Gene |
Length: |
2705
|
Chromosome Location: |
Chr1: 3137649-3140353 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
dsRNA-binding domain-like superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin. |
TAIR Short Description: |
dsRNA-binding domain-like superfamily protein |
TAIR Aliases: |
AtDRB1, DRB1, HYL1 |
|
•
•
•
•
•
|
Gene |
Length: |
1493
|
Chromosome Location: |
Chr1: 8067864-8069356 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Ribosomal protein S13/S18 family;(source:Araport11) |
TAIR Curator Summary: |
S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. |
TAIR Short Description: |
Ribosomal protein S13/S18 family |
TAIR Aliases: |
PFL, PFL1, RPS18A |
|
•
•
•
•
•
|
Gene |
Length: |
2249
|
Chromosome Location: |
Chr2: 15781232-15783480 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
myb-like HTH transcriptional regulator family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a MYB-domain protein involved in specification of the leaf proximodistal axis. Mutation results in lobed and dissected leaves with a characteristic asymmetry. Homologous to the Antirrhinum PHANTASTICA (PHAN) and maize ROUGH SHEATH2 (RS2) genes Asymmetric placement of auxin response at the distal leaf tip precedes visible asymmetric leaf growth. Acts alongside AXR1 to exclude BP expression in leaves and with PIN1 to repress BP and promote lateral organ growth. Interacts physically with AS2 to form a complex that binds to the BP promoter and silences BP. Also functions as a regulator of the plant immune response. |
TAIR Short Description: |
myb-like HTH transcriptional regulator family protein |
TAIR Aliases: |
AS1, ATMYB91, ATPHAN, LL2, MYB91 |
|
•
•
•
•
•
|
Gene |
Length: |
2847
|
Chromosome Location: |
Chr1: 24398143-24400989 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Lateral organ boundaries (LOB) domain family protein;(source:Araport11) |
TAIR Curator Summary: |
required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP. |
TAIR Short Description: |
Lateral organ boundaries (LOB) domain family protein |
TAIR Aliases: |
AS2 |
|
•
•
•
•
•
|
Gene |
Length: |
1136
|
Chromosome Location: |
Chr2: 17668701-17669836 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Lateral organ boundaries (LOB) domain family protein;(source:Araport11) |
TAIR Curator Summary: |
NULL |
TAIR Short Description: |
Lateral organ boundaries (LOB) domain family protein |
TAIR Aliases: |
ASL15, LBD17 |
|
•
•
•
•
•
|
Gene |
Length: |
3193
|
Chromosome Location: |
Chr4: 8666334-8669526 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
beta-amylase 5;(source:Araport11) |
TAIR Curator Summary: |
cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. |
TAIR Short Description: |
beta-amylase 5 |
TAIR Aliases: |
AT-BETA-AMY, ATBETA-AMY, BAM5, BMY1, RAM1 |
|
•
•
•
•
•
|
Gene |
Length: |
1481
|
Chromosome Location: |
Chr1: 4747186-4748666 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
KTI12-like, chromatin associated protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots. Mutants also have no ncm5U (5-carbamoylmethyluridine). |
TAIR Short Description: |
calmodulin binding;purine nucleotide binding |
TAIR Aliases: |
AtKTI12, DRL1 |
|
•
•
•
•
•
|
Gene |
Length: |
1072
|
Chromosome Location: |
Chr5: 14641442-14642513 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
HIT-type Zinc finger family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes SERRATED LEAVES AND EARLY FLOWERING (SEF), an Arabidopsis homolog of the yeast SWC6 protein, a conserved subunit of the SWR1/SRCAP complex. SEF loss-of-function mutants have a pleiotropic phenotype characterized by serrated leaves, frequent absence of inflorescence internodes, bushy aspect, and flowers with altered number and size of organs. sef plants flower earlier than wild-type plants both under inductive and non-inductive photoperiods. SEF, ARP6 and PIE1 might form a molecular complex in Arabidopsis related to the SWR1/SRCAP complex identified in other eukaryotes. |
TAIR Short Description: |
HIT-type Zinc finger family protein |
TAIR Aliases: |
ATSWC6, SEF |
|
•
•
•
•
•
|
Author |
|
•
•
•
•
•
|
Gene |
Length: |
2317
|
Chromosome Location: |
Chr1: 11911631-11913947 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
NAC domain protein 13;(source:Araport11) |
TAIR Curator Summary: |
Expression in rosette leaves is activated by high concentration of boron. |
TAIR Short Description: |
NAC domain protein 13 |
TAIR Aliases: |
ANAC013, ANAC13, NAC13 |
|
•
•
•
•
•
|
Gene |
Length: |
2129
|
Chromosome Location: |
Chr2: 1353755-1355883 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
MATE efflux family protein;(source:Araport11) |
TAIR Curator Summary: |
Expression in rosette leaves is activated by high concentration of boron. |
TAIR Short Description: |
MATE efflux family protein |
|
|
•
•
•
•
•
|
Gene |
Length: |
2464
|
Chromosome Location: |
Chr1: 1356084-1358547 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
tubulin alpha-4 chain;(source:Araport11) |
TAIR Curator Summary: |
Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. |
TAIR Short Description: |
tubulin alpha-4 chain |
TAIR Aliases: |
TOR2, TUA4 |
|
•
•
•
•
•
|
Gene |
Length: |
1741
|
Chromosome Location: |
Chr2: 18419370-18421110 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
chloroplast chaperonin 10;(source:Araport11) |
TAIR Curator Summary: |
Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots. |
TAIR Short Description: |
chloroplast chaperonin 10 |
TAIR Aliases: |
CHL-CPN10, CPN10 |
|
•
•
•
•
•
|
Gene |
Length: |
2025
|
Chromosome Location: |
Chr1: 24134085-24136109 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
gamma-tocopherol methyltransferase;(source:Araport11) |
TAIR Curator Summary: |
gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves |
TAIR Short Description: |
gamma-tocopherol methyltransferase |
TAIR Aliases: |
G-TMT, TMT1, VTE4 |
|
•
•
•
•
•
|
Gene |
Length: |
1814
|
Chromosome Location: |
Chr2: 11143290-11145103 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
IQ-domain 6;(source:Araport11) |
TAIR Curator Summary: |
Transient Expression of Pro35S:YFP-IQD5 in leaves of N. benthamiana alters microtubule organization.Member of IQ67 (CaM binding) domain containing family. |
TAIR Short Description: |
IQ-domain 6 |
TAIR Aliases: |
IQD6 |
|
•
•
•
•
•
|
Gene |
Length: |
8064
|
Chromosome Location: |
Chr3: 21534064-21542127 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants |
TAIR Short Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
TAIR Aliases: |
ATMYOS3, ATXIJ, MYA3, XI-16, XIJ |
|
•
•
•
•
•
|
Gene |
Length: |
1240
|
Chromosome Location: |
Chr3: 22914154-22915393 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
homeobox 12;(source:Araport11) |
TAIR Curator Summary: |
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. |
TAIR Short Description: |
homeobox 12 |
TAIR Aliases: |
ATHB-12, ATHB12, HB-12, HB12 |
|
•
•
•
•
•
|
Gene |
Length: |
1539
|
Chromosome Location: |
Chr3: 20430059-20431597 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Chalcone-flavanone isomerase family protein;(source:Araport11) |
TAIR Curator Summary: |
Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Co-expressed with CHS. |
TAIR Short Description: |
Chalcone-flavanone isomerase family protein |
TAIR Aliases: |
A11, AtCHI, CFI, CHI, TT5 |
|
•
•
•
•
•
|
Gene |
Length: |
4961
|
Chromosome Location: |
Chr5: 3536189-3541149 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
sucrose phosphate synthase 2F;(source:Araport11) |
TAIR Curator Summary: |
Encodes a sucrose-phosphate synthase involved in pollen exine formation. This is the dominant SPS isoform in leaves with respect to protein levels. |
TAIR Short Description: |
sucrose phosphate synthase 2F |
TAIR Aliases: |
ATSPS2F, KNS2, SPS1, SPS2F, SPSA2 |
|
•
•
•
•
•
|
Gene |
Length: |
1008
|
Chromosome Location: |
Chr5: 6975029-6976036 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
germin 3;(source:Araport11) |
TAIR Curator Summary: |
Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation. |
TAIR Short Description: |
germin 3 |
TAIR Aliases: |
ATGER3, GER3, GLP3, GLP3A, GLP3B |
|
•
•
•
•
•
|
Gene |
Length: |
1937
|
Chromosome Location: |
Chr1: 30194618-30196554 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
sulfate transmembrane transporter;(source:Araport11) |
TAIR Curator Summary: |
MOT2 encodes a molybdate transporter which locates to the vacuolar membrane. Loss-of-function (knock out) mutants show elevated molydate levels in rosette leaves and in fully senescent leaves, but decreased MoO4 levels in seeds. Under conditions of molybdate deficiency leaves from mot2::tDNA mutants show strongly reduced nitrate reductase activity. The mot2 gene is slightly expressed in young and mature leaves, but strongly in senescing leaves. This observation points to a function of MOT2 in molybdate transfer from leaves to seeds during plant senescence. |
TAIR Short Description: |
sulfate transmembrane transporters |
TAIR Aliases: |
MOT2 |
|
•
•
•
•
•
|
Gene |
Length: |
1366
|
Chromosome Location: |
Chr2: 9254378-9255743 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
marker for oxidative stress response protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein of unknown function that is a marker for oxidative stress response.Expression in rosette leaves is activated by high concentration of boron. |
TAIR Short Description: |
NULL |
|
|
•
•
•
•
•
|
Gene |
Length: |
965
|
Chromosome Location: |
Chr2: 17409370-17410334 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
calcium-binding site protein;(source:Araport11) |
TAIR Curator Summary: |
H2O2 response gene, sensor/responder of H2O2, involved in maintaining embryonic root meristem activity. Expression in rosette leaves is activated by high concentration of boron. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
HRG1 |
|
•
•
•
•
•
|
Gene |
Length: |
3012
|
Chromosome Location: |
Chr4: 10304662-10307673 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons. |
TAIR Short Description: |
Pentatricopeptide repeat (PPR) superfamily protein |
TAIR Aliases: |
DOT4 |
|
•
•
•
•
•
|
Gene |
Length: |
3304
|
Chromosome Location: |
Chr3: 18393747-18397050 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. |
TAIR Short Description: |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
TAIR Aliases: |
DIN11 |
|
•
•
•
•
•
|
Gene |
Length: |
2364
|
Chromosome Location: |
Chr4: 9454707-9457070 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11) |
TAIR Curator Summary: |
3-methylglutaconyl-CoA hydratase localized to mitochondria. Knockout displays accelerated senescence when subjected to extended dark conditions;knockout senescing leaves and knockout seeds accumulate leu, ile, and val. |
TAIR Short Description: |
ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
|
|
•
•
•
•
•
|
Gene |
Length: |
2767
|
Chromosome Location: |
Chr4: 15662266-15665032 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11) |
TAIR Curator Summary: |
BDX is a DUF642 cell wall protein primarily expressed in vascular tissues of roots, leaves and embryos. Mutants show defects in seed and embryo development. |
TAIR Short Description: |
Protein of unknown function, DUF642 |
TAIR Aliases: |
AthA1-1, BDX, BIIDXI |
|
•
•
•
•
•
|
Gene |
Length: |
2231
|
Chromosome Location: |
Chr1: 3969681-3971911 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Undecaprenyl pyrophosphate synthetase family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a cis-prenyltransferase, involved in dolichol biosynthesis. Wilted leaves in mutants due to cell membrane lesions. Mutants have increased drought tolerance, but hypersensitve to dark stress. |
TAIR Short Description: |
Undecaprenyl pyrophosphate synthetase family protein |
TAIR Aliases: |
LEW1 |
|
•
•
•
•
•
|
Gene |
Length: |
2089
|
Chromosome Location: |
Chr1: 6006413-6008501 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
IQ-domain 7;(source:Araport11) |
TAIR Curator Summary: |
Transient expression of Pro35S:GFP-IQD7 in leaves of N. benthamiana alters microtubule organization, in patterns similar to Pro35S:GFP-IQD8 and Pro35S:GFP-IQD6.Member of IQ67 (CaM binding) domain containing family. |
TAIR Short Description: |
IQ-domain 7 |
TAIR Aliases: |
IQD7 |
|
•
•
•
•
•
|
Gene |
Length: |
2434
|
Chromosome Location: |
Chr4: 13080827-13083260 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ACD1-like protein;(source:Araport11) |
TAIR Curator Summary: |
Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment. |
TAIR Short Description: |
ACD1-like |
TAIR Aliases: |
ACD1-LIKE, PTC52, TIC55-IV |
|
•
•
•
•
•
|
Gene |
Length: |
2596
|
Chromosome Location: |
Chr4: 17461366-17463961 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
PATATIN-like protein 5;(source:Araport11) |
TAIR Curator Summary: |
Patatin-related phospholipase A. Expressed weakly in roots, cotyledons, and leaves but is transcriptionally induced by auxin. Phosphorylation by calcium-dependent protein kinases in vitro enhances its activity. |
TAIR Short Description: |
PATATIN-like protein 5 |
TAIR Aliases: |
AtPLAIVB, PLA IVB, PLP5 |
|
•
•
•
•
•
|
Gene |
Length: |
1579
|
Chromosome Location: |
Chr1: 28131447-28133025 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
response regulator 15;(source:Araport11) |
TAIR Curator Summary: |
Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment. |
TAIR Short Description: |
response regulator 15 |
TAIR Aliases: |
ARR15 |
|
•
•
•
•
•
|
Gene |
Length: |
2269
|
Chromosome Location: |
Chr3: 20527063-20529331 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
OBF-binding protein 3;(source:Araport11) |
TAIR Curator Summary: |
Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots. |
TAIR Short Description: |
OBF-binding protein 3 |
TAIR Aliases: |
OBP3 |
|
•
•
•
•
•
|
Gene |
Length: |
1554
|
Chromosome Location: |
Chr2: 12414108-12415661 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
outer plastid envelope protein 16-1;(source:Araport11) |
TAIR Curator Summary: |
Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. |
TAIR Short Description: |
outer plastid envelope protein 16-1 |
TAIR Aliases: |
ATOEP16-1, ATOEP16-L, OEP16, OEP16-1 |
|
•
•
•
•
•
|
Gene |
Length: |
1910
|
Chromosome Location: |
Chr3: 2510570-2512479 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
F-box and associated interaction domains-containing protein;(source:Araport11) |
TAIR Curator Summary: |
FBX92 is an F-box containing protein. Overexpression produces plants with smaller leaves while reduced expression is correlated with increased leaf size and increased rates of cell proliferation. |
TAIR Short Description: |
F-box and associated interaction domains-containing protein |
TAIR Aliases: |
FBX92 |
|
•
•
•
•
•
|
Gene |
Length: |
2827
|
Chromosome Location: |
Chr1: 25041833-25044659 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Mannose-6-phosphate isomerase, type I;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. |
TAIR Short Description: |
Mannose-6-phosphate isomerase, type I |
TAIR Aliases: |
DIN9, PMI2 |
|
•
•
•
•
•
|
Gene |
Length: |
3299
|
Chromosome Location: |
Chr5: 6833564-6836862 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Raffinose synthase family protein;(source:Araport11) |
TAIR Curator Summary: |
encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
Raffinose synthase family protein |
TAIR Aliases: |
DIN10, RS6 |
|
•
•
•
•
•
|
Gene |
Length: |
1585
|
Chromosome Location: |
Chr2: 12868461-12870045 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Lateral organ boundaries (LOB) domain family protein;(source:Araport11) |
TAIR Curator Summary: |
Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression. |
TAIR Short Description: |
Lateral organ boundaries (LOB) domain family protein |
TAIR Aliases: |
ASL5, LBD12, PCK1 |
|
•
•
•
•
•
|
Gene |
Length: |
3405
|
Chromosome Location: |
Chr1: 30372668-30376072 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
natural resistance-associated macrophage protein 1;(source:Araport11) |
TAIR Curator Summary: |
Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants. |
TAIR Short Description: |
natural resistance-associated macrophage protein 1 |
TAIR Aliases: |
ATNRAMP1, NRAMP1, PMIT1 |
|
•
•
•
•
•
|
Gene |
Length: |
877
|
Chromosome Location: |
Chr2: 6225351-6226227 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
basic pathogenesis-related protein 1;(source:Araport11) |
TAIR Curator Summary: |
pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression. |
TAIR Short Description: |
basic pathogenesis-related protein 1 |
TAIR Aliases: |
AtCAPE7, ATPRB1, PRB1 |
|
•
•
•
•
•
|
Gene |
Length: |
1301
|
Chromosome Location: |
Chr5: 22711141-22712441 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
nicotianamine synthase 2;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. |
TAIR Short Description: |
nicotianamine synthase 2 |
TAIR Aliases: |
ATNAS2, NAS2 |
|
•
•
•
•
•
|
Gene |
Length: |
7132
|
Chromosome Location: |
Chr3: 1401171-1408302 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ARM repeat superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species. |
TAIR Short Description: |
ARM repeat superfamily protein |
TAIR Aliases: |
HST, HST1 |
|
•
•
•
•
•
|
Gene |
Length: |
4285
|
Chromosome Location: |
Chr3: 22216540-22220824 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Glycosyl hydrolase superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
Glycosyl hydrolase superfamily protein |
TAIR Aliases: |
BGLU30, DIN2, SRG2 |
|
•
•
•
•
•
|
Gene |
Length: |
2826
|
Chromosome Location: |
Chr5: 1679230-1682055 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
gamma-tubulin complex protein 2;(source:Araport11) |
TAIR Curator Summary: |
Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant. Enriched at the post-cytokinetic cell edges in leaves and roots. |
TAIR Short Description: |
gamma-tubulin complex protein 2 |
TAIR Aliases: |
ATGCP2, GCP2, TUBG2 |
|
•
•
•
•
•
|
Gene |
Length: |
3332
|
Chromosome Location: |
Chr5: 2056528-2059859 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
spindle pole body component 98;(source:Araport11) |
TAIR Curator Summary: |
Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes. Enriched at the post-cytokinetic cell edges in leaves and roots. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
spindle pole body component 98 |
TAIR Aliases: |
ATGCP3, ATSPC98, GCP3, SPC98 |
|
•
•
•
•
•
|
Gene |
Length: |
2356
|
Chromosome Location: |
Chr5: 23479781-23482136 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
C-terminal domain phosphatase-like 4;(source:Araport11) |
TAIR Curator Summary: |
Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences. |
TAIR Short Description: |
C-terminal domain phosphatase-like 4 |
TAIR Aliases: |
CPL4, FCP1 |
|
•
•
•
•
•
|
Gene |
Length: |
3864
|
Chromosome Location: |
Chr1: 4361551-4365414 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Nucleic acid-binding, OB-fold-like protein;(source:Araport11) |
TAIR Curator Summary: |
SDP is a chloroplast localized RNA binding protein that is required for plastid rRNA processing. Plants harboring a mutation in SDP have numerous defects including reduced chlorophyll content, poor growth, yellow leaves and abnormal chloroplasts. |
TAIR Short Description: |
Nucleic acid-binding, OB-fold-like protein |
TAIR Aliases: |
SDP |
|
•
•
•
•
•
|
Gene |
Length: |
3592
|
Chromosome Location: |
Chr3: 17437840-17441431 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
glutamine-dependent asparagine synthase 1;(source:Araport11) |
TAIR Curator Summary: |
encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. |
TAIR Short Description: |
glutamine-dependent asparagine synthase 1 |
TAIR Aliases: |
ASN1, AT-ASN1, DIN6 |
|
•
•
•
•
•
|
Gene |
Length: |
8704
|
Chromosome Location: |
Chr5: 1129785-1138488 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
glutamate synthase 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
glutamate synthase 1 |
TAIR Aliases: |
FD-GOGAT, GLS1, GLU1, GLUS |
|
•
•
•
•
•
|
Gene |
Length: |
2281
|
Chromosome Location: |
Chr2: 1334270-1336550 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
MATE efflux family protein;(source:Araport11) |
TAIR Curator Summary: |
AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including Cd2+. Expression in rosette leaves is activated by high concentration of boron.Mistakenly referred to as At2g04070 in PMID:11739388. |
TAIR Short Description: |
MATE efflux family protein |
TAIR Aliases: |
ATDTX1, DTX1, TX1 |
|
•
•
•
•
•
|
Gene |
Length: |
1324
|
Chromosome Location: |
Chr2: 15165213-15166536 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Glycine-rich protein family;(source:Araport11) |
TAIR Curator Summary: |
Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
Glycine-rich protein family |
TAIR Aliases: |
DOT1 |
|
•
•
•
•
•
|
Gene |
Length: |
2683
|
Chromosome Location: |
Chr3: 18207651-18210333 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
peroxidase CB;(source:Araport11) |
TAIR Curator Summary: |
Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
peroxidase CB |
TAIR Aliases: |
ATPCB, ATPERX34, AtPRX34, PERX34, PRX34, PRXCB |
|
•
•
•
•
•
|
Gene |
Length: |
2822
|
Chromosome Location: |
Chr2: 9728480-9731301 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
growth-regulating factor 1;(source:Araport11) |
TAIR Curator Summary: |
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower |
TAIR Short Description: |
growth-regulating factor 1 |
TAIR Aliases: |
AtGRF1, GRF1 |
|
•
•
•
•
•
|
Gene |
Length: |
3028
|
Chromosome Location: |
Chr2: 15270088-15273115 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
growth-regulating factor 3;(source:Araport11) |
TAIR Curator Summary: |
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower. |
TAIR Short Description: |
growth-regulating factor 3 |
TAIR Aliases: |
AtGRF3, GRF3 |
|
•
•
•
•
•
|
Gene |
Length: |
566
|
Chromosome Location: |
Chr2: 15534739-15535304 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
DVL family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes ROTUNDIFOLIA4, a member of the seed plant-specific family of small peptides, RTFL (ROT FOUR LIKE), characterised by the presence of a 29-amino acid domain: RTF. Expressed in shoot apices, young leaves and flowers. Involved in controlling polarity-dependent cell proliferation. |
TAIR Short Description: |
DVL family protein |
TAIR Aliases: |
DVL16, ROT4 |
|
•
•
•
•
•
|
Gene |
Length: |
2573
|
Chromosome Location: |
Chr4: 17725337-17727909 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
growth-regulating factor 2;(source:Araport11) |
TAIR Curator Summary: |
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower |
TAIR Short Description: |
growth-regulating factor 2 |
TAIR Aliases: |
AtGRF2, GRF2 |
|
•
•
•
•
•
|
Gene |
Length: |
1246
|
Chromosome Location: |
Chr5: 5658416-5659661 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
glutathione S-transferase phi 12;(source:Araport11) |
TAIR Curator Summary: |
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. Likely to function as a carrier to transport anthocyanin from the cytosol to tonoplasts. |
TAIR Short Description: |
glutathione S-transferase phi 12 |
TAIR Aliases: |
ATGSTF12, GST26, GSTF12, TT19 |
|
•
•
•
•
•
|
Gene |
Length: |
1789
|
Chromosome Location: |
Chr5: 4488476-4490264 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Chalcone and stilbene synthase family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
Chalcone and stilbene synthase family protein |
TAIR Aliases: |
ATCHS, CHS, TT4 |
|
•
•
•
•
•
|
Gene |
Length: |
3328
|
Chromosome Location: |
Chr1: 187145-190472 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction. It has been shown to localize to cytosolic stress granules and is involved in their formation. |
TAIR Short Description: |
NAD(P)-binding Rossmann-fold superfamily protein |
TAIR Aliases: |
AN, DOQ |
|
•
•
•
•
•
|
Gene |
Length: |
1064
|
Chromosome Location: |
Chr1: 30339322-30340385 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
zinc-finger protein 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation. |
TAIR Short Description: |
zinc-finger protein 1 |
TAIR Aliases: |
ATZFP1, ZFP1 |
|
•
•
•
•
•
|
Gene |
Length: |
1922
|
Chromosome Location: |
Chr2: 7682162-7684083 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ascorbic acid mannose pathway regulator, putative (DUF295);(source:Araport11) |
TAIR Curator Summary: |
Encodes an F-box domain containing protein that is regulated by non-CG DNA methylation. In drm1 drm2 cmt3 triple mutant background SDC expression is no longer suppressed and plants display abnormal development including curled leaves and reduced stature. A maternally expressed imprinted gene. |
TAIR Short Description: |
F-box family protein with a domain of unknown function (DUF295) |
TAIR Aliases: |
AtFDA13, SDC |
|
•
•
•
•
•
|
Gene |
Length: |
3145
|
Chromosome Location: |
Chr4: 18399923-18403067 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
gamma-glutamyl transpeptidase 1;(source:Araport11) |
TAIR Curator Summary: |
The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. |
TAIR Short Description: |
gamma-glutamyl transpeptidase 1 |
TAIR Aliases: |
GGT1 |
|
•
•
•
•
•
|
Gene |
Length: |
3278
|
Chromosome Location: |
Chr3: 20254639-20257916 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Peptidase M28 family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1. |
TAIR Short Description: |
Peptidase M28 family protein |
TAIR Aliases: |
AMP1, AtAMP1, COP2, HPT, MFO1, PT |
|
•
•
•
•
•
|
Gene |
Length: |
2850
|
Chromosome Location: |
Chr5: 5772568-5775417 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
root cap 1 (RCP1);(source:Araport11) |
TAIR Curator Summary: |
Encodes a maltose transporter that is expressed in leaves and roots. Mutations at the MEX1 locus cause accumulation of both starch and maltose in leaves, with maltose levels at least 40 times higher than that of wild-type. This gene encodes a protein located in the chloroplast envelope. |
TAIR Short Description: |
root cap 1 (RCP1) |
TAIR Aliases: |
MEX1, RCP1 |
|
•
•
•
•
•
|
Gene |
Length: |
4640
|
Chromosome Location: |
Chr5: 8266566-8271205 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Glycogen/starch synthases, ADP-glucose type;(source:Araport11) |
TAIR Curator Summary: |
SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch. |
TAIR Short Description: |
Glycogen/starch synthases, ADP-glucose type |
TAIR Aliases: |
ATSS1, SS1 |
|
•
•
•
•
•
|
Gene |
Length: |
2600
|
Chromosome Location: |
Chr5: 10647467-10650066 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
SSXT family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. |
TAIR Short Description: |
SSXT family protein |
TAIR Aliases: |
AN3, ATGIF1, GIF, GIF1 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Gene |
Length: |
3922
|
Chromosome Location: |
Chr1: 26101407-26105328 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Argonaute family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds. |
TAIR Short Description: |
Argonaute family protein |
TAIR Aliases: |
AGO7, ZIP |
|
•
•
•
•
•
|
Gene |
Length: |
2223
|
Chromosome Location: |
Chr1: 28720328-28722550 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
cyclin-dependent kinase B2;(source:Araport11) |
TAIR Curator Summary: |
Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling. |
TAIR Short Description: |
cyclin-dependent kinase B2;1 |
TAIR Aliases: |
CDKB2;1 |
|
•
•
•
•
•
|
Gene |
Length: |
826
|
Chromosome Location: |
Chr3: 3281306-3282131 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
LOSS OF GIANT CELLS FROM ORGANS;(source:Araport11) |
TAIR Curator Summary: |
Encodes LGO (loss of giant cells from organs) required for endoreduplication in sepal giant cell formation. Giant cells in both leaves and sepals are absent in lgo mutants. LGO is a member of a plant specific cell cycle inhibitor family SIAMESE and was originally named as SMR1(SIAMESE RELATED 1). |
TAIR Short Description: |
LOSS OF GIANT CELLS FROM ORGANS |
TAIR Aliases: |
LGO, SMR1 |
|
•
•
•
•
•
|
Gene |
Length: |
1643
|
Chromosome Location: |
Chr5: 26957915-26959557 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
NADH-ubiquinone oxidoreductase-like protein;(source:Araport11) |
TAIR Curator Summary: |
Mutant leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase, EC 1.6.5.3) in the mitochondrial electron transfer chain. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
NADH-ubiquinone oxidoreductase-related |
TAIR Aliases: |
FRO1, NDUFS4 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Gene |
Length: |
2830
|
Chromosome Location: |
Chr1: 1678881-1681710 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
uridine-ribohydrolase 2;(source:Araport11) |
TAIR Curator Summary: |
Encodes a cytosolic inosine nucleoside hydrolase. It forms a heterocomplex with NSH1 with almost two orders of magnitude higher catalytic efficiency for xanthosine hydrolysis than observed for NSH1 alone. Transcript levels for this gene are elevated in older leaves suggesting that it may play a role in purine catabolism during senescence. |
TAIR Short Description: |
uridine-ribohydrolase 2 |
TAIR Aliases: |
NSH2, URH2 |
|
•
•
•
•
•
|
Gene |
Length: |
1328
|
Chromosome Location: |
Chr2: 15445294-15446621 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
gamma tonoplast intrinsic protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a tonoplast intrinsic protein, which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root, stem, cauline leaves and flowers but not in the apical meristems. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
gamma tonoplast intrinsic protein |
TAIR Aliases: |
GAMMA-TIP, GAMMA-TIP1, TIP1;1 |
|
•
•
•
•
•
|
Gene |
Length: |
1468
|
Chromosome Location: |
Chr1: 4550153-4551620 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
C2H2-like zinc finger protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development. |
TAIR Short Description: |
C2H2-like zinc finger protein |
TAIR Aliases: |
DOT5, WIP6 |
|
•
•
•
•
•
|
Gene |
Length: |
2503
|
Chromosome Location: |
Chr2: 17587169-17589671 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
squamosa promoter binding protein-like 9;(source:Araport11) |
TAIR Curator Summary: |
Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. SPL activity nonautonomously inhibits initiation of new leaves at the shoot apical meristem. Overexpression of SPL9 (rSPL9) promoted the expression of C-REPEAT BINDING FACTOR 2 (CBF2) and hereafter enhanced the freezing tolerance. |
TAIR Short Description: |
squamosa promoter binding protein-like 9 |
TAIR Aliases: |
AtSPL9, SPL9 |
|
•
•
•
•
•
|
Gene |
Length: |
2125
|
Chromosome Location: |
Chr1: 5187549-5189673 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
lipid phosphate phosphatase 2;(source:Araport11) |
TAIR Curator Summary: |
Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. |
TAIR Short Description: |
lipid phosphate phosphatase 2 |
TAIR Aliases: |
ATLPP2, ATPAP2, LPP2 |
|
•
•
•
•
•
|
Gene |
Length: |
2528
|
Chromosome Location: |
Chr2: 18628252-18630779 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Plant-specific transcription factor YABBY family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS). |
TAIR Short Description: |
Plant-specific transcription factor YABBY family protein |
TAIR Aliases: |
AFO, FIL, YAB1 |
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Protein Domain |
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Gene |
Length: |
4639
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Chromosome Location: |
Chr1: 1607202-1611840 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
DNAse I-like superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays. |
TAIR Short Description: |
DNAse I-like superfamily protein |
TAIR Aliases: |
CVP2 |
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Gene |
Length: |
5140
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Chromosome Location: |
Chr1: 1682224-1687363 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Endonuclease/exonuclease/phosphatase family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated increase in cytosolic calcium ion. |
TAIR Short Description: |
Endonuclease/exonuclease/phosphatase family protein |
TAIR Aliases: |
5PTASE13, AT5PTASE13 |
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Gene |
Length: |
1316
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Chromosome Location: |
Chr2: 12960847-12962162 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Homeodomain-like superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
In a tandem repeat with AT2G30424 and AT2G30432. Negative regulator of trichome development. Overexpression results in the suppression of trichomes and overproduction of root hairs; single mutant shows an increase in trichome number on leaves and petiols. Double and triple mutant analysis indicates that the ETC2 gene acts redundant with TRY and CPC in trichome patterning. |
TAIR Short Description: |
Homeodomain-like superfamily protein |
TAIR Aliases: |
ETC2 |
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Gene |
Length: |
1216
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Chromosome Location: |
Chr4: 9028262-9029477 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
drought-induced 21;(source:Araport11) |
TAIR Curator Summary: |
encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
drought-induced 21 |
TAIR Aliases: |
ATDI21, DI21 |
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Gene |
Length: |
3581
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Chromosome Location: |
Chr1: 21024486-21028066 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ATP-dependent zinc metalloprotease;(source:Araport11) |
TAIR Curator Summary: |
VIR3 encodes a putative chloroplast metalloprotease that is localized to the thylakoid membrane. The vir3-1 mutant came out of a genetic suppressor screen of the Arabidopsis variegation mutant yellow variegated (var2). The suppressor displayed an additional virescent phenotype, i.e. the bases of young leaves were yellow, and leaf color gradually turned to green toward the leaf tips. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
VIR3 |
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GO Term |
Description: |
The extension of a long process to the pial surface as a cell leaves the ventricular zone. |
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Gene |
Length: |
196
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Chromosome Location: |
Chr1: 6220646-6220841 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
microRNA ath-MIR159b precursor;(source:Araport11) |
TAIR Curator Summary: |
Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCUU. Functions redundantly with MIR159A. Plants that are doubly mutated for MIR159AB have curled leaves and reduced stature. |
TAIR Short Description: |
MIR159/MIR159B; miRNA |
TAIR Aliases: |
MIR159, MIR159B |
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Gene |
Length: |
2210
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Chromosome Location: |
Chr4: 16574544-16576753 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
GLN phosphoribosyl pyrophosphate amidotransferase 2;(source:Araport11) |
TAIR Curator Summary: |
Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage. Plays role in differential development of vascular-associated cells. Demonstrates a cell-specific difference in chloroplast development.Mutant leaves are highly reticulate with a green vascular pattern. |
TAIR Short Description: |
GLN phosphoribosyl pyrophosphate amidotransferase 2 |
TAIR Aliases: |
ASE2, ATASE2, ATPURF2, CIA1, DOV1 |
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Gene |
Length: |
18607
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Chromosome Location: |
Chr1: 24064822-24083428 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ILITYHIA;(source:Araport11) |
TAIR Curator Summary: |
ILITHYIA (ILA) is a HEAT repeat protein involved in plant immunity. The gene is also involved in systemic acquired resistance induced by P. syringae expressing avrRps4. Loss-of-function mutants of ILA caused pleiotropic defects in the mutant plants. The mutant plants are smaller in size and the leaves are serrated and yellow to light green in color. Required for bacterium-triggered stomatal closure. |
TAIR Short Description: |
ILITYHIA |
TAIR Aliases: |
GCN1, ILA, NOXY7 |
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Gene |
Length: |
813
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Chromosome Location: |
Chr5: 19646028-19646840 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica. DIR1 protein is cell-to-cell mobile and is transported via phloem sap. |
TAIR Short Description: |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
TAIR Aliases: |
DIR1 |
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Gene |
Length: |
2023
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Chromosome Location: |
Chr1: 21072855-21074877 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
drought-induced 19;(source:Araport11) |
TAIR Curator Summary: |
Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It's phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal |
TAIR Short Description: |
drought-induced 19 |
TAIR Aliases: |
ATDIL9, DIL9, DIL9-1 |
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Gene |
Length: |
1168
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Chromosome Location: |
Chr3: 21506572-21507739 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
C2H2 and C2HC zinc fingers superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile–adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. |
TAIR Short Description: |
C2H2 and C2HC zinc fingers superfamily protein |
TAIR Aliases: |
GIS |
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Gene |
Length: |
4088
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Chromosome Location: |
Chr2: 18986133-18990220 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
BCL-2-associated athanogene 6;(source:Araport11) |
TAIR Curator Summary: |
A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
BCL-2-associated athanogene 6 |
TAIR Aliases: |
ATBAG6, BAG6 |
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Gene |
Length: |
3032
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Chromosome Location: |
Chr4: 72545-75576 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Plant-specific transcription factor YABBY family protein;(source:Araport11) |
TAIR Curator Summary: |
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades. |
TAIR Short Description: |
Plant-specific transcription factor YABBY family protein |
TAIR Aliases: |
YAB3 |
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Protein Domain |
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Gene |
Length: |
1791
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Chromosome Location: |
Chr1: 6846338-6848128 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
trigalactosyldiacylglycerol 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2. |
TAIR Short Description: |
trigalactosyldiacylglycerol 1 |
TAIR Aliases: |
ABCI14, TGD1 |
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Gene |
Length: |
3540
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Chromosome Location: |
Chr2: 11034652-11038191 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ataurora2;(source:Araport11) |
TAIR Curator Summary: |
Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. |
TAIR Short Description: |
ataurora2 |
TAIR Aliases: |
AtAUR2, AUR2 |
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Gene |
Length: |
1725
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Chromosome Location: |
Chr2: 14144831-14146555 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Caleosin-related family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to desiccation. mRNA expression under drought conditions is apparent particularly in leaves and flowers. Isoform of caleosin with a role as a peroxygenase involved in oxylipin metabolism during biotic and abiotic stress. Involved in the production of 2-hydroxy-octadecatrienoic acid. The peroxygenase has a narrow substrate specificity thus acting as a fatty acid hydroperoxide reductase in vivo. |
TAIR Short Description: |
Caleosin-related family protein |
TAIR Aliases: |
AtCLO3, AtRD20, CLO-3, CLO3, PXG3, RD20 |
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