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Search results 1 to 100 out of 2114 for flowering

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Type Details Score
Gene
AT4G25530 | locus:2131814 | FWA | FLOWERING WAGENINGEN
Length: 4105  
Chromosome Location: Chr4: 13038360-13042464
Organism . Short Name: A. thaliana
TAIR Computational Description: FLOWERING WAGENINGEN;(source:Araport11)
TAIR Curator Summary: Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.
TAIR Short Description: FLOWERING WAGENINGEN
TAIR Aliases: FWA, HDG6
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Gene
AT3G21320 | locus:2094711 | AT3G21320 | -
 
Length: 3077  
Chromosome Location: Chr3: 7498812-7501888
Organism . Short Name: A. thaliana
TAIR Computational Description: EARLY FLOWERING protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT5G24860 | locus:2149368 | FPF1 | FLOWERING PROMOTING FACTOR 1
Length: 916  
Chromosome Location: Chr5: 8541558-8542473
Organism . Short Name: A. thaliana
TAIR Computational Description: flowering promoting factor 1;(source:Araport11)
TAIR Curator Summary: encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.
TAIR Short Description: flowering promoting factor 1
TAIR Aliases: ATFPF1, FPF1
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Ontology Term
- | Flowering
Description: Protein involved in the transition from vegetative to reproductive development in plants
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Gene
AT4G16280 | locus:2130364 | FCA | -
Length: 8385  
Chromosome Location: Chr4: 9206597-9214981
Organism . Short Name: A. thaliana
TAIR Computational Description: flowering time control protein FCA;(source:Araport11)
TAIR Curator Summary: Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing. At one point it was believed to act as an abscisic acid receptor but the paper describing that function was retracted.
TAIR Short Description: RNA binding;abscisic acid binding
TAIR Aliases: FCA
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Gene
AT3G48430 | locus:504955644 | REF6 | relative of early flowering 6
Length: 5537  
Chromosome Location: Chr3: 17935256-17940792
Organism . Short Name: A. thaliana
TAIR Computational Description: relative of early flowering 6;(source:Araport11)
TAIR Curator Summary: Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins. The mRNA is cell-to-cell mobile.
TAIR Short Description: relative of early flowering 6
TAIR Aliases: EIN6, JMJ12, REF6
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Gene
AT3G10390 | locus:2075870 | FLD | FLOWERING LOCUS D
Length: 3472  
Chromosome Location: Chr3: 3229060-3232531
Organism . Short Name: A. thaliana
TAIR Computational Description: protein FLOWERING locus D-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.
TAIR Short Description: Flavin containing amine oxidoreductase family protein
TAIR Aliases: FLD, RSI1
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Gene
AT3G15010 | locus:2086325 | AT3G15010 | -
Length: 3293  
Chromosome Location: Chr3: 5052725-5056017
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
TAIR Curator Summary: Encodes a flowering repressor that represses flowering by promoting the transcription of the flowering repressor gene FLM, thereby preventing early flowering and hypocotyl and petiole elongation.
TAIR Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
TAIR Aliases: UBA2c
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Gene
AT2G30140 | locus:2060832 | UGT87A2 | UDP-glucosyl transferase 87A2
Length: 1883  
Chromosome Location: Chr2: 12871984-12873866
Organism . Short Name: A. thaliana
TAIR Computational Description: UDP-Glycosyltransferase superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a putative glycosyltransferase. Regulates flowering time via FLOWERING LOCUS C.
TAIR Short Description: UDP-Glycosyltransferase superfamily protein
TAIR Aliases: UGT87A2
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Gene
AT5G48890 | locus:2156529 | LATE | LATE FLOWERING
Length: 1060  
Chromosome Location: Chr5: 19819948-19821007
Organism . Short Name: A. thaliana
TAIR Computational Description: C2H2-like zinc finger protein;(source:Araport11)
TAIR Curator Summary: Encodes a C(2) H(2) -type zinc-finger transcriptional regulator and is expressed in the leaf vasculature and the vegetative shoot apical meristem and controls the transition to flowering.
TAIR Short Description: C2H2-like zinc finger protein
TAIR Aliases: LATE
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Gene
AT5G62640 | locus:2172229 | ELF5 | EARLY FLOWERING 5
Length: 3235  
Chromosome Location: Chr5: 25149329-25152563
Organism . Short Name: A. thaliana
TAIR Computational Description: proline-rich family protein;(source:Araport11)
TAIR Curator Summary: nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC
TAIR Short Description: proline-rich family protein
TAIR Aliases: AtELF5, ELF5
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Ontology Term Synonym
Ontology Term Synonym
Name: flowering
Type: synonym
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Gene
AT3G09190 | locus:2095319 | AT3G09190 | -
 
Length: 1489  
Chromosome Location: Chr3: 2821448-2822936
Organism . Short Name: A. thaliana
TAIR Computational Description: Concanavalin A-like lectin family protein;(source:Araport11)
TAIR Curator Summary: Regulates flowering time in Ws ecotype.
TAIR Short Description: Concanavalin A-like lectin family protein
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Gene
AT3G19140 | locus:2094108 | DNF | DAY NEUTRAL FLOWERING
Length: 426  
Chromosome Location: Chr3: 6614910-6615335
Organism . Short Name: A. thaliana
TAIR Computational Description: RING/U-box superfamily protein;(source:Araport11)
TAIR Curator Summary: DAY NEUTRAL FLOWERING (DNF) is a membrane-bound E3 ligase involved in the regulation of flowering time in Arabidopsis. It negetively regulate the early flowering under Short Day condition.
TAIR Short Description: RING/U-box superfamily protein
TAIR Aliases: ATL62, DNF
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Gene
AT1G25540 | locus:2031200 | PFT1 | PHYTOCHROME AND FLOWERING TIME 1
Length: 5751  
Chromosome Location: Chr1: 8969065-8974815
Organism . Short Name: A. thaliana
TAIR Computational Description: phytochrome and flowering time regulatory protein (PFT1);(source:Araport11)
TAIR Curator Summary: Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. PFT1 promotes flowering in CO dependent and independent pathways and integrates several environmental stimuli, such as light quality and JA-dependent defenses. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense.
TAIR Short Description: phytochrome and flowering time regulatory protein (PFT1)
TAIR Aliases: MED25, PFT1
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Gene
AT5G01040 | locus:2150039 | LAC8 | laccase 8
Length: 3109  
Chromosome Location: Chr5: 13128-16236
Organism . Short Name: A. thaliana
TAIR Computational Description: laccase 8;(source:Araport11)
TAIR Curator Summary: putative laccase, knockout mutant showed early flowering
TAIR Short Description: laccase 8
TAIR Aliases: LAC8
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Gene
AT5G10140 | locus:2184118 | FLC | FLOWERING LOCUS C
Length: 6067  
Chromosome Location: Chr5: 3173382-3179448
Organism . Short Name: A. thaliana
TAIR Computational Description: K-box region and MADS-box transcription factor family protein;(source:Araport11)
TAIR Curator Summary: MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.
TAIR Short Description: K-box region and MADS-box transcription factor family protein
TAIR Aliases: AGL25, FLC, FLF, RSB6
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Gene
AT2G25930 | locus:2043520 | ELF3 | EARLY FLOWERING 3
Length: 4381  
Chromosome Location: Chr2: 11058944-11063324
Organism . Short Name: A. thaliana
TAIR Computational Description: hydroxyproline-rich glycoprotein family protein;(source:Araport11)
TAIR Curator Summary: Encodes a nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway. Required component of the core circadian clock regardless of light conditions.
TAIR Short Description: hydroxyproline-rich glycoprotein family protein
TAIR Aliases: ELF3, PYK20
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Gene
AT2G40080 | locus:2061226 | ELF4 | EARLY FLOWERING 4
Length: 660  
Chromosome Location: Chr2: 16734294-16734953
Organism . Short Name: A. thaliana
TAIR Computational Description: EARLY FLOWERING-like protein (DUF1313);(source:Araport11)
TAIR Curator Summary: Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.
TAIR Short Description: Protein of unknown function (DUF1313)
TAIR Aliases: ELF4
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Gene
AT2G42280 | locus:2059979 | FBH4 | FLOWERING BHLH 4
Length: 2476  
Chromosome Location: Chr2: 17611185-17613660
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: AKS3, FBH4
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Gene
AT5G04240 | locus:2146653 | ELF6 | EARLY FLOWERING 6
Length: 5840  
Chromosome Location: Chr5: 1169153-1174992
Organism . Short Name: A. thaliana
TAIR Computational Description: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein;(source:Araport11)
TAIR Curator Summary: Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes.
TAIR Short Description: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
TAIR Aliases: ELF6
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Gene
AT1G35460 | locus:2008693 | FBH1 | FLOWERING BHLH 1
Length: 2500  
Chromosome Location: Chr1: 13039660-13042159
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a bHLH transcription factor involved in CFL1-mediated regulation of cuticle development. Overexpression leads to abnormal cuticle development.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: CFLAP2, FBH1
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Gene
AT1G51140 | locus:2026037 | FBH3 | FLOWERING BHLH 3
Length: 2366  
Chromosome Location: Chr1: 18943447-18945812
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a basic helix-loop-helix-type transcription factor involved in photoperiodism flowering. Binds to the E-box cis-element in the CONSTANS (CO) promoter to regulate flowering. Interacts with CFL1 and along with CFLAP2 negatively regulates cuticle development. Binds to the potassium channel gene KAT1 as a dimer. The DNA-binding capacity is inhibited in response to ABA through phosphorylation-dependent monomerization.
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: AKS1, CFLAP1, FBH3
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Gene
AT1G65480 | locus:2034168 | FT | FLOWERING LOCUS T
Length: 2627  
Chromosome Location: Chr1: 24331373-24333999
Organism . Short Name: A. thaliana
TAIR Computational Description: PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
TAIR Curator Summary: FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). Together with TSF, it plays an antagonistic role to TFL1 in the determination of inflorescence meristem identity. FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.
TAIR Short Description: PEBP (phosphatidylethanolamine-binding protein) family protein
TAIR Aliases: FT, RSB8
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Gene
AT1G79730 | locus:2017879 | ELF7 | EARLY FLOWERING 7
Length: 3546  
Chromosome Location: Chr1: 30000538-30004083
Organism . Short Name: A. thaliana
TAIR Computational Description: hydroxyproline-rich glycoprotein family protein;(source:Araport11)
TAIR Curator Summary: Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. Member of PAF-C complex.
TAIR Short Description: hydroxyproline-rich glycoprotein family protein
TAIR Aliases: ELF7
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Gene
AT2G06210 | locus:2051592 | ELF8 | EARLY FLOWERING 8
Length: 7785  
Chromosome Location: Chr2: 2428903-2436687
Organism . Short Name: A. thaliana
TAIR Computational Description: binding protein;(source:Araport11)
TAIR Curator Summary: Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. Member of PAF-C complex.
TAIR Short Description: binding
TAIR Aliases: ELF8, NRF2, VIP6
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Gene
AT4G09180 | locus:2141573 | FBH2 | FLOWERING BHLH 2
Length: 2452  
Chromosome Location: Chr4: 5847312-5849763
Organism . Short Name: A. thaliana
TAIR Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR Aliases: FBH2
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Gene
AT5G16260 | locus:2181452 | ELF9 | EARLY FLOWERING 9
Length: 4694  
Chromosome Location: Chr5: 5311141-5315834
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
TAIR Curator Summary: Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. The mRNA is cell-to-cell mobile.
TAIR Short Description: RNA binding (RRM/RBD/RNP motifs) family protein
TAIR Aliases: ELF9, RRM
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Gene
AT2G47310 | locus:2065190 | AT2G47310 | -
Length: 3689  
Chromosome Location: Chr2: 19423589-19427277
Organism . Short Name: A. thaliana
TAIR Computational Description: flowering time control protein-related / FCA gamma-like protein;(source:Araport11)
TAIR Curator Summary: Functions in an antagonistic manner to its close homolog FCA. The SSF414N protein variant interacts more strongly with CUL1, a component of the E3 ubiquitination complex, than the SSF414D form, mediating differences in SSF protein degradation and FLC expression.
TAIR Short Description: flowering time control protein-related / FCA gamma-related
TAIR Aliases: SSF
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Protein
A0A9E9FWE7_ARATH | A0A9E9FWE7
Organism . Name: Arabidopsis thaliana
Length: 278  
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Protein
LATE_ARATH | Q9FKA9
Organism . Name: Arabidopsis thaliana
Length: 173  
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Gene
AT5G57170 | locus:2175554 | AT5G57170 | -
Length: 1414  
Chromosome Location: Chr5: 23161877-23163290
Organism . Short Name: A. thaliana
TAIR Computational Description: Tautomerase/MIF superfamily protein;(source:Araport11)
TAIR Curator Summary: Chemokine-like MDL protein; modulates flowering time and innate immunity.
TAIR Short Description: Tautomerase/MIF superfamily protein
TAIR Aliases: AT5G57170, MDL1
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Gene
AT4G22140 | locus:2120693 | EBS | EARLY BOLTING IN SHORT DAYS
Length: 2804  
Chromosome Location: Chr4: 11727706-11730509
Organism . Short Name: A. thaliana
TAIR Computational Description: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein;(source:Araport11)
TAIR Curator Summary: Encoding a chromatin remodeling factor that regulates flowering time.
TAIR Short Description: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
TAIR Aliases: EBS
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Protein Domain
IPR038864
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Gene
AT5G17240 | locus:2167235 | SDG40 | SET domain group 40
Length: 2085  
Chromosome Location: Chr5: 5666823-5668907
Organism . Short Name: A. thaliana
TAIR Computational Description: SET domain group 40;(source:Araport11)
TAIR Curator Summary: NMD epigenetically regulates FLC though SDG40 to modulate flowering time.
TAIR Short Description: SET domain group 40
TAIR Aliases: SDG40
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Gene
AT3G12810 | locus:2087780 | PIE1 | PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
Length: 9153  
Chromosome Location: Chr3: 4065042-4074194
Organism . Short Name: A. thaliana
TAIR Computational Description: SNF2 domain-containing protein / helicase domain-containing protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). The mRNA is cell-to-cell mobile.
TAIR Short Description: SNF2 domain-containing protein / helicase domain-containing protein
TAIR Aliases: chr13, PIE1, SRCAP
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Gene
AT3G04610 | locus:2084908 | FLK | flowering locus KH domain
Length: 4432  
Chromosome Location: Chr3: 1250553-1254984
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-binding KH domain-containing protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: RNA-binding KH domain-containing protein
TAIR Aliases: AtKH11, FLK
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Gene
AT1G77080 | locus:2025282 | MAF1 | MADS AFFECTING FLOWERING 1
     
Length: 4752  
Chromosome Location: Chr1: 28955483-28960234
Organism . Short Name: A. thaliana
TAIR Aliases: AGL27, FLM, MAF1
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Gene
AT5G65060 | locus:2144345 | MAF3 | MADS AFFECTING FLOWERING 3
Length: 4104  
Chromosome Location: Chr5: 25987309-25991412
Organism . Short Name: A. thaliana
TAIR Computational Description: K-box region and MADS-box transcription factor family protein;(source:Araport11)
TAIR Curator Summary: MADS domain protein - flowering regulator that is closely related to FLC
TAIR Short Description: K-box region and MADS-box transcription factor family protein
TAIR Aliases: AGL70, FCL3, MAF3
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Gene
AT5G65070 | locus:2144350 | MAF4 | MADS AFFECTING FLOWERING 4
Length: 4010  
Chromosome Location: Chr5: 25992193-25996202
Organism . Short Name: A. thaliana
TAIR Computational Description: K-box region and MADS-box transcription factor family protein;(source:Araport11)
TAIR Curator Summary: Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.
TAIR Short Description: K-box region and MADS-box transcription factor family protein
TAIR Aliases: AGL69, FCL4, MAF4
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Gene
AT5G65080 | locus:2144355 | MAF5 | MADS AFFECTING FLOWERING 5
Length: 5116  
Chromosome Location: Chr5: 25997504-26002619
Organism . Short Name: A. thaliana
TAIR Computational Description: K-box region/MADS-box transcription factor family protein;(source:Araport11)
TAIR Curator Summary: Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.
TAIR Short Description: K-box region and MADS-box transcription factor family protein
TAIR Aliases: AGL68, MAF5
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Gene
AT2G46320 | locus:2039055 | AT2G46320 | -
Length: 2684  
Chromosome Location: Chr2: 19015808-19018491
Organism . Short Name: A. thaliana
TAIR Computational Description: Mitochondrial substrate carrier family protein;(source:Araport11)
TAIR Curator Summary: Involved in Mn and Fe homeostasis, root length, and flowering time.
TAIR Short Description: Mitochondrial substrate carrier family protein
TAIR Aliases: MTM2
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Gene
AT4G16310 | locus:2130454 | LDL3 | LSD1-like 3
Length: 8293  
Chromosome Location: Chr4: 9217988-9226280
Organism . Short Name: A. thaliana
TAIR Computational Description: LSD1-like 3;(source:Araport11)
TAIR Curator Summary: FAD-dependent lysine-specific histone demethylase involved in the control of flowering time.
TAIR Short Description: LSD1-like 3
TAIR Aliases: LDL3
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Gene
AT4G27940 | locus:2132947 | MTM1 | manganese tracking factor for mitochondrial SOD2
Length: 3141  
Chromosome Location: Chr4: 13904265-13907405
Organism . Short Name: A. thaliana
TAIR Computational Description: manganese tracking factor for mitochondrial SOD2;(source:Araport11)
TAIR Curator Summary: Involved in Mn and Fe homeostasis, root length, and flowering time.
TAIR Short Description: manganese tracking factor for mitochondrial SOD2
TAIR Aliases: ATMTM1, MTM1
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Gene
AT5G01650 | locus:2149830 | AT5G01650 | -
Length: 1662  
Chromosome Location: Chr5: 242450-244111
Organism . Short Name: A. thaliana
TAIR Computational Description: Tautomerase/MIF superfamily protein;(source:Araport11)
TAIR Curator Summary: Chemokine-like MDL protein; modulate flowering time and innate immunity in plants.
TAIR Short Description: Tautomerase/MIF superfamily protein
TAIR Aliases: MDL2
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Gene
AT3G51660 | locus:2098272 | AT3G51660 | -
Length: 1328  
Chromosome Location: Chr3: 19163995-19165322
Organism . Short Name: A. thaliana
TAIR Computational Description: Tautomerase/MIF superfamily protein;(source:Araport11)
TAIR Curator Summary: Chemokine-like MDL protein; modulate flowering time and innate immunity in plants.
TAIR Short Description: Tautomerase/MIF superfamily protein
TAIR Aliases: MDL3
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Gene
AT3G09670 | locus:2074944 | AT3G09670 | -
Length: 2858  
Chromosome Location: Chr3: 2966201-2969058
Organism . Short Name: A. thaliana
TAIR Computational Description: Tudor/PWWP/MBT superfamily protein;(source:Araport11)
TAIR Curator Summary: PWWP domain protein involved in regulation of FLC and flowering time.
TAIR Short Description: Tudor/PWWP/MBT superfamily protein
TAIR Aliases: PDP2
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Gene
AT5G27650 | locus:2143631 | AT5G27650 | -
Length: 3948  
Chromosome Location: Chr5: 9785407-9789354
Organism . Short Name: A. thaliana
TAIR Computational Description: Tudor/PWWP/MBT superfamily protein;(source:Araport11)
TAIR Curator Summary: PWWP domain protein involved in regulation of FLC and flowering time.
TAIR Short Description: Tudor/PWWP/MBT superfamily protein
TAIR Aliases: PDP1
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Gene
AT5G40340 | locus:2170563 | AT5G40340 | -
Length: 4513  
Chromosome Location: Chr5: 16130881-16135393
Organism . Short Name: A. thaliana
TAIR Computational Description: Tudor/PWWP/MBT superfamily protein;(source:Araport11)
TAIR Curator Summary: PWWP domain protein involved in regulation of FLC and flowering time.
TAIR Short Description: Tudor/PWWP/MBT superfamily protein
TAIR Aliases: PDP3
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Protein Domain
IPR044718
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Protein Domain
IPR045281
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Gene
AT4G14465 | locus:505006460 | AHL20 | AT-hook motif nuclear-localized protein 20
Length: 1815  
Chromosome Location: Chr4: 8320538-8322352
Organism . Short Name: A. thaliana
TAIR Computational Description: AT-hook motif nuclear-localized protein 20;(source:Araport11)
TAIR Curator Summary: AT-hook protein. Overexpression results in early flowering in short and long days.
TAIR Short Description: AT-hook motif nuclear-localized protein 20
TAIR Aliases: AHL20
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Protein Domain
IPR047193
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Gene
AT1G59660 | locus:2202887 | AT1G59660 | -
Length: 5452  
Chromosome Location: Chr1: 21923986-21929437
Organism . Short Name: A. thaliana
TAIR Computational Description: Nucleoporin autopeptidase;(source:Araport11)
TAIR Curator Summary: Encodes a protein with similarity to mammalian nucleoporin Nup98.Its expression is upregulated in mutants that are NUP deficient. Nucleoportin which redundantly inhibits flowering together with Nup98a through multiple pathways including clock, photoperiod, and age pathways. Gates flowering in a CONSTANS (CO)-independent mode and bypasses the CO checkpoint in photoperiodic signaling and integrated signals from multiple pathways to directly target FLOWERING LOCUS T (FT) for flowering control.
TAIR Short Description: Nucleoporin autopeptidase
TAIR Aliases: DRAL, Nup98b
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Gene
AT3G01890 | locus:2078713 | AT3G01890 | -
Length: 2067  
Chromosome Location: Chr3: 310007-312073
Organism . Short Name: A. thaliana
TAIR Computational Description: SWIB/MDM2 domain superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes SWP73A, a subunit of the SWI/SNF chromatin remodeling complex. While undergoing normal vegetative development, swp73a mutants display reduced expression of FLOWERING LOCUS C and early flowering in short days.
TAIR Short Description: SWIB/MDM2 domain superfamily protein
TAIR Aliases: SWP73A
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Gene
AT1G26220 | locus:2028766 | AT1G26220 | -
Length: 722  
Chromosome Location: Chr1: 9071140-9071861
Organism . Short Name: A. thaliana
TAIR Computational Description: Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11)
TAIR Curator Summary: Catalyzes formation of N-acetylserotonin (NAS) from serotonin. Involved in the GA-related flowering pathway.
TAIR Short Description: Acyl-CoA N-acyltransferases (NAT) superfamily protein
TAIR Aliases: GNAT1, SNAT2
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Protein
FLD_ARATH | Q9CAE3
Organism . Name: Arabidopsis thaliana
Length: 789  
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Protein
FT_ARATH | Q9SXZ2
Organism . Name: Arabidopsis thaliana
Length: 175  
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Protein
FT_ARATH-2 | Q9SXZ2-2
Organism . Name: Arabidopsis thaliana
Length: 122  
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Protein
A0A1P8BBM5_ARATH | A0A1P8BBM5
Organism . Name: Arabidopsis thaliana
Length: 173  
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Protein
A0A1P8BBN7_ARATH | A0A1P8BBN7
Organism . Name: Arabidopsis thaliana
Length: 146  
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Protein
A0A5S9X185_ARATH | A0A5S9X185
Organism . Name: Arabidopsis thaliana
Length: 696  
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Protein
A0A654EWA4_ARATH | A0A654EWA4
Organism . Name: Arabidopsis thaliana
Length: 707  
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Protein
G4WUB7_ARATH | G4WUB7
Organism . Name: Arabidopsis thaliana
Length: 196  
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Protein
Q52T61_ARATH | Q52T61
Organism . Name: Arabidopsis thaliana
Length: 196  
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Protein
Q5Q9J3_ARATH | Q5Q9J3
Organism . Name: Arabidopsis thaliana
Length: 196  
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Protein
ELF4_ARATH | O04211
Organism . Name: Arabidopsis thaliana
Length: 111  
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Protein
ELF3_ARATH | O82804
Organism . Name: Arabidopsis thaliana
Length: 695  
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Protein
ELF3_ARATH-2 | O82804-2
Organism . Name: Arabidopsis thaliana
Length: 339  
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Protein
ELF5_ARATH | Q9LV14
Organism . Name: Arabidopsis thaliana
Length: 520  
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Protein
ELF5_ARATH-2 | Q9LV14-2
Organism . Name: Arabidopsis thaliana
Length: 514  
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Gene
AT1G12610 | locus:2195052 | DDF1 | DWARF AND DELAYED FLOWERING 1
Length: 1135  
Chromosome Location: Chr1: 4289883-4291017
Organism . Short Name: A. thaliana
TAIR Computational Description: Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.
TAIR Short Description: Integrase-type DNA-binding superfamily protein
TAIR Aliases: ATDDF1, DDF1
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Gene
AT1G63030 | locus:2015168 | ddf2 | DWARF AND DELAYED FLOWERING 2
Length: 1023  
Chromosome Location: Chr1: 23367394-23368416
Organism . Short Name: A. thaliana
TAIR Computational Description: Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.
TAIR Short Description: Integrase-type DNA-binding superfamily protein
TAIR Aliases: ATDDF2, ddf2
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Gene
AT1G77300 | locus:2196000 | EFS | EARLY FLOWERING IN SHORT DAYS
Length: 9533  
Chromosome Location: Chr1: 29039922-29049454
Organism . Short Name: A. thaliana
TAIR Computational Description: histone-lysine N-methyltransferase;(source:Araport11)
TAIR Curator Summary: Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis and nitrogen assimilation.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.Required for ovule, embryo sac, anther and pollen development.
TAIR Short Description: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific)
TAIR Aliases: ASHH2, CCR1, CLI186, EFS, LAZ2, SDG8
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Gene
AT5G37055 | locus:505006661 | SEF | SERRATED LEAVES AND EARLY FLOWERING
Length: 1072  
Chromosome Location: Chr5: 14641442-14642513
Organism . Short Name: A. thaliana
TAIR Computational Description: HIT-type Zinc finger family protein;(source:Araport11)
TAIR Curator Summary: Encodes SERRATED LEAVES AND EARLY FLOWERING (SEF), an Arabidopsis homolog of the yeast SWC6 protein, a conserved subunit of the SWR1/SRCAP complex. SEF loss-of-function mutants have a pleiotropic phenotype characterized by serrated leaves, frequent absence of inflorescence internodes, bushy aspect, and flowers with altered number and size of organs. sef plants flower earlier than wild-type plants both under inductive and non-inductive photoperiods. SEF, ARP6 and PIE1 might form a molecular complex in Arabidopsis related to the SWR1/SRCAP complex identified in other eukaryotes.
TAIR Short Description: HIT-type Zinc finger family protein
TAIR Aliases: ATSWC6, SEF
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Protein Domain
IPR012474
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Gene
AT2G29950 | locus:2045673 | ELF4-L1 | ELF4-like 1
Length: 853  
Chromosome Location: Chr2: 12767585-12768437
Organism . Short Name: A. thaliana
TAIR Computational Description: ELF4-like 1;(source:Araport11)
TAIR Curator Summary: Member of a small family of proteins containing DUF1313 domain. Involved in flowering time.
TAIR Short Description: ELF4-like 1
TAIR Aliases: EFL1, ELF4-L1
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Gene
AT4G29230 | locus:2118264 | NAC075 | NAC domain containing protein 75
Length: 5710  
Chromosome Location: Chr4: 14409772-14415481
Organism . Short Name: A. thaliana
TAIR Computational Description: NAC domain containing protein 75;(source:Araport11)
TAIR Curator Summary: NAC domain protein involved in negative regulation of flowering and secondary cell wall biosynthesis.
TAIR Short Description: NAC domain containing protein 75
TAIR Aliases: anac075, NAC075, SND4
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Gene
AT2G01290 | locus:2038801 | RPI2 | ribose-5-phosphate isomerase 2
Length: 1667  
Chromosome Location: Chr2: 148919-150585
Organism . Short Name: A. thaliana
TAIR Computational Description: ribose-5-phosphate isomerase 2;(source:Araport11)
TAIR Curator Summary: Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.
TAIR Short Description: ribose-5-phosphate isomerase 2
TAIR Aliases: RPI2
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GO Term
GO:0048573 | photoperiodism, flowering
Description: A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
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Ontology Term Synonym
Ontology Term Synonym
Name: long-night photoperiodism, flowering
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: short-night photoperiodism, flowering
Type: synonym
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Gene
AT1G11520 | locus:2200126 | AT1G11520 | -
 
Length: 591  
Chromosome Location: Chr1: 3873029-3873619
Organism . Short Name: A. thaliana
TAIR Computational Description: pliceosome associated protein-like protein;(source:Araport11)
TAIR Curator Summary: A northern Swedish accession containing a 182-bp deletion in this gene had delayed flowering time.
TAIR Short Description: pliceosome associated protein-related
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Gene
AT4G36690 | locus:2115280 | ATU2AF65A | -
Length: 3824  
Chromosome Location: Chr4: 17293938-17297761
Organism . Short Name: A. thaliana
TAIR Computational Description: U2 snRNP auxilliary factor, large subunit, splicing factor;(source:Araport11)
TAIR Curator Summary: Regulates flowering time and displays a redundant role in pollen tube growth together with AtU2AF65b.
TAIR Short Description: U2 snRNP auxilliary factor, large subunit, splicing factor
TAIR Aliases: ATU2AF65A
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Protein Domain
IPR026211
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GO Term
GO:0048576 | positive regulation of short-day photoperiodism, flowering
Description: Any process that activates, maintains or increases short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.
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GO Term
GO:0048578 | positive regulation of long-day photoperiodism, flowering
Description: Any process that activates, maintains or increases long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.
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Gene
AT2G32320 | locus:2062611 | AT2G32320 | -
Length: 5176  
Chromosome Location: Chr2: 13726781-13731956
Organism . Short Name: A. thaliana
TAIR Computational Description: tRNAHis guanylyltransferase;(source:Araport11)
TAIR Curator Summary: Interacts genetically with its homolog ICA1; alters growth and flowering time plasticity in relation to temperature. Mutants display effects on growth, flowering and plant development, and ploidy level depending on ambient temperature (effects specific at >27C).
TAIR Short Description: tRNAHis guanylyltransferase
TAIR Aliases: ICA2
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Gene
AT1G70170 | locus:2020548 | MMP | matrix metalloproteinase
Length: 1483  
Chromosome Location: Chr1: 26423874-26425356
Organism . Short Name: A. thaliana
TAIR Computational Description: matrix metalloproteinase;(source:Araport11)
TAIR Curator Summary: Matrix metalloprotease. Expression induced by fungal and bacterial pathogens. Mutants are late flowering with early senescence.
TAIR Short Description: matrix metalloproteinase
TAIR Aliases: At2-MMP, MMP
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GO Term
GO:0048577 | negative regulation of short-day photoperiodism, flowering
Description: Any process that stops, prevents or reduces short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.
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GO Term
GO:0048579 | negative regulation of long-day photoperiodism, flowering
Description: Any process that stops, prevents or reduces long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.
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Protein Domain
IPR039277
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Protein Domain
IPR039319
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Gene
AT1G35560 | locus:2014661 | AT1G35560 | -
Length: 1412  
Chromosome Location: Chr1: 13115824-13117235
Organism . Short Name: A. thaliana
TAIR Computational Description: TCP family transcription factor;(source:Araport11)
TAIR Curator Summary: Encodes a member of the TCP-P subfamily that is involved in flowering time control and plant development. Mutants present an early flowering phenotype. Promotes together with TCP7, 8, 14, 15, 21, and 23 endoreduplication-dependent cell expansion in leaf.
TAIR Short Description: TCP family transcription factor
TAIR Aliases: AtTCP23, TCP23
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Protein Domain
IPR044246
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Gene
AT5G42400 | locus:2162346 | SDG25 | SET domain protein 25
Length: 7731  
Chromosome Location: Chr5: 16953515-16961245
Organism . Short Name: A. thaliana
TAIR Computational Description: SET domain protein 25;(source:Araport11)
TAIR Curator Summary: Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.
TAIR Short Description: SET domain protein 25
TAIR Aliases: ATXR7, SDG25
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Protein Domain
IPR044251
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GO Term
GO:0048574 | long-day photoperiodism, flowering
Description: A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light that exceeds the critical day length. The critical day length varies between species. Although the term is long-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness falls short of the number of hours defined by 24 minus the critical day length.
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GO Term
GO:0048575 | short-day photoperiodism, flowering
Description: A change from vegetative to reproductive phase as a result of detection of, or exposure to, a period of light that falls short of the critical day length. The critical day length varies between species. Although the term is short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 minus the critical day length.
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Gene
AT1G60900 | locus:2206001 | AT1G60900 | -
Length: 4160  
Chromosome Location: Chr1: 22423894-22428053
Organism . Short Name: A. thaliana
TAIR Computational Description: U2 snRNP auxilliary factor, large subunit, splicing factor;(source:Araport11)
TAIR Curator Summary: Putative U2A65 splicing factor which functions in abscisic acid mediated flowering via regulating the precursor messenger RNA splicing of ABI5 and FLC in shoot apex. Regulates flowering time and displays a redundant role in pollen tube growth together with AtU2AF65a.
TAIR Short Description: U2 snRNP auxilliary factor, large subunit, splicing factor
TAIR Aliases: ATU2AF65B, U2AF65b
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