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Search results 1 to 100 out of 80378 for Transcription Start Site

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0.076s
Type Details Score
Ontology Term Synonym
Name: transcription start site
Type: synonym
Ontology Term Synonym
Name: major transcription start site
Type: synonym
GO Term
Description: Binding to a general transcription initiation factor, a protein that contributes to transcription start site selection and transcription initiation.
SO Term
Description: The first base where RNA polymerase begins to synthesize the RNA transcript.
SO Term
Description: The tanscription start site that is most frequently used for transcription of a gene.
Ontology Term Synonym
Name: replication start site
Type: synonym
SO Term
Description: The first base to be translated into protein.
Ontology Term Synonym
Name: transcriptional start site cluster
Type: synonym
SO Term
Description: A nucleotide site from which replication initiates.
Ontology Term Synonym
Name: DNA-dependent transcriptional start site selection
Type: synonym
Gene
Length: 965  
Chromosome Location: Chr2: 17409370-17410334
Organism . Short Name: A. thaliana
TAIR Computational Description: calcium-binding site protein;(source:Araport11)
TAIR Curator Summary: H2O2 response gene, sensor/responder of H2O2, involved in maintaining embryonic root meristem activity. Expression in rosette leaves is activated by high concentration of boron.
TAIR Short Description: NULL
TAIR Aliases: HRG1
Ontology Term Synonym
Name: regulation of transcription start site selection at RNA polymerase II promoter
Type: synonym
GO Term
Description: Any process that modulates the rate, frequency or extent of a process involved in the selection of the specific location within the template strand of an RNA polymerase II promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript.
Gene
Length: 4105  
Chromosome Location: Chr4: 13038360-13042464
Organism . Short Name: A. thaliana
TAIR Computational Description: FLOWERING WAGENINGEN;(source:Araport11)
TAIR Curator Summary: Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.
TAIR Short Description: FLOWERING WAGENINGEN
TAIR Aliases: FWA, HDG6
GeneRIF (Gene Reference into Function)
Annotation: During short-term cold exposure, histone H3 acetylation at the transcription start site rapidly increased, implying that it is required for VIN3 induction.
Organism: A. thaliana
Gene: VIN3
PubMed Id: 19825652
SO Term
Description: A gene that has multiple possible transcription start sites.
Ontology Term Synonym
Name: encodes alternate transcription start sites
Type: synonym
GO Term
Description: Any process involved in the selection of the specific location within the template strand of a DNA-dependent RNA polymerase promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript.
Protein Domain
Gene  
Length: 3507  
Chromosome Location: Chr4: 8578741-8582247
Organism . Short Name: A. thaliana
TAIR Computational Description: folate-sensitive fragile site protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
Gene    
Length: 1802  
Chromosome Location: Chr5: 12440488-12442289
Organism . Short Name: A. thaliana
TAIR Computational Description: START domain protein;(source:Araport11)
TAIR Short Description: NULL
Protein Domain
Publication
First Author: Soutourina O
Title: Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human Enteropathogen Clostridioides difficile.
Year: 2020
Journal: Front Microbiol
Volume: 11
Pages: 1939
Gene
Length: 2083  
Chromosome Location: Chr1: 7242896-7244978
Organism . Short Name: A. thaliana
TAIR Computational Description: multiple chloroplast division site 1;(source:Araport11)
TAIR Curator Summary: Encodes MCD1 (MULTIPLE CHLOROPLAST DIVISION SITE 1). Determines the site of chloroplast division in concert with MinD (AT5G24020).
TAIR Short Description: multiple chloroplast division site 1
TAIR Aliases: MCD1
GO Term
Description: Binding to a regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase I transcription machinery. This site is often referred to as the CORE element. In mammalian cells, the CORE element functions in conjunction with the Upstream Control Element (UCE), while in fungi, protozoa, and plants, the CORE element functions without a UCE.
Gene  
Length: 965  
Chromosome Location: Chr2: 18320732-18321696
Organism . Short Name: A. thaliana
TAIR Computational Description: ecotropic viral integration site protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
SO Term
Description: The base where transcription ends.
SO Term
Description: Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli.
Ontology Term Synonym
Name: transcription end site
Type: synonym
Ontology Term Synonym
Name: transcription pause site
Type: synonym
Protein Domain
GO Term
Description: Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA by a mechanism that selects the start site along that template.
GO Term
Description: Binding to a GC-box, a DNA motif with the consensus sequence GGGCGG that is located upstream of the start point of eukaryotic transcription units. The GC-box may occur in multiple copies or in either orientation relative to the transcription start site.
GO Term
Description: Binding to a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.
GO Term
Description: Binding to a sequence of DNA that is a part of a type 1 promoter that controls transcription by RNA polymerase III. Type 1 promoters are found in 5S rRNA genes, downstream of the transcription start site within the sequence of the mature RNA, and require TFIIIA for recognition.
Publication
First Author: Kneidl C
Title: An intrinsically bent region upstream of the transcription start site of the rRNA genes of Arabidopsis thaliana interacts with an HMG-related protein.
Year: 1995
Journal: Plant Mol Biol
Volume: 27
Pages: 705-13
GO Term
Description: Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II.
Ontology Term Synonym
Name: transcription factor binding site
Type: synonym
Ontology Term Synonym
Name: transcriptional start site selection at bacterial-type RNA polymerase promoter
Type: synonym
Publication
First Author: Sanmartín M
Title: MINIYO and transcriptional elongation: lifting the roadblock to differentiation.
Year: 2012
Journal: Transcription
Volume: 3
Pages: 25-8
Publication
First Author: Glatt S
Title: Elongator: transcriptional or translational regulator?
Year: 2012
Journal: Transcription
Volume: 3
Pages: 273-6
Publication
First Author: Deng Z
Title: Yin Yang 1: a multifaceted protein beyond a transcription factor.
Year: 2010
Journal: Transcription
Volume: 1
Pages: 81-4
Publication
First Author: Ni Z
Title: Control of the RNA polymerase II phosphorylation state in promoter regions by CTD interaction domain-containing proteins RPRD1A and RPRD1B.
Year: 2011
Journal: Transcription
Volume: 2
Pages: 237-42
Publication
First Author: Khan A
Title: BEND3 mediates transcriptional repression and heterochromatin organization.
Year: 2015
Journal: Transcription
Volume: 6
Pages: 102-5
Publication
First Author: Chau BL
Title: RGG boxes within the TET/FET family of RNA-binding proteins are functionally distinct.
Year: 2016
Journal: Transcription
Volume: 7
Pages: 141-51
Gene
Length: 5137  
Chromosome Location: Chr5: 3679748-3684884
Organism . Short Name: A. thaliana
TAIR Computational Description: myb domain protein 3r-4;(source:Araport11)
TAIR Curator Summary: Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4. Functions in powdery mildew induced host endoreduplication at the site of infection. Activates mitotic gene expression, cytokinin response.
TAIR Short Description: myb domain protein 3r-4
TAIR Aliases: AtMYB3R4, MYB3R-4
SO Term
Description: A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667].
GeneRIF (Gene Reference into Function)
Annotation: Deletion of the START domain from Arabidopsis Glabra2, a representative HD-Zip transcription factor, results in a complete loss-of-function phenotype. The mammalian START domain from StAR can functionally replace the HD-Zip-derived START domain.
Organism: A. thaliana
Gene: GL2
PubMed Id: 25159688
Gene  
Length: 2469  
Chromosome Location: Chr5: 2277813-2280281
Organism . Short Name: A. thaliana
TAIR Computational Description: START (StAR-related lipid-transfer) lipid-binding domain-containing protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: START (StAR-related lipid-transfer) lipid-binding domain
Gene  
Length: 2142  
Chromosome Location: Chr4: 13525031-13527172
Organism . Short Name: A. thaliana
TAIR Computational Description: START (StAR-related lipid-transfer) lipid-binding domain-containing protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: START (StAR-related lipid-transfer) lipid-binding domain
Gene
Length: 1447  
Chromosome Location: Chr3: 19758157-19759603
Organism . Short Name: A. thaliana
TAIR Computational Description: cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene;(source:Araport11)
TAIR Curator Summary: missing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.html
TAIR Short Description: cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene
TAIR Aliases: CYP71B30P
Gene
Length: 2297  
Chromosome Location: Chr2: 19404802-19407098
Organism . Short Name: A. thaliana
TAIR Computational Description: WRKY DNA-binding protein 23;(source:Araport11)
TAIR Curator Summary: Encodes a member of WRKY Transcription Factor; Group I. Involved in nematode feeding site establishment and auxin mediated PIN polar localization in roots. Expression is induced by auxin.
TAIR Short Description: WRKY DNA-binding protein 23
TAIR Aliases: ATWRKY23, WRKY23
Gene
Length: 5289  
Chromosome Location: Chr2: 11109003-11114291
Organism . Short Name: A. thaliana
TAIR Computational Description: glycine decarboxylase P-protein 2;(source:Araport11)
TAIR Curator Summary: P-subunit of glycine decarboxylase.The P subunit is the site of glycine binding.
TAIR Short Description: glycine decarboxylase P-protein 2
TAIR Aliases: AtGLDP2, GLDP2
Publication
First Author: Duchêne M
Title: Sequence and transcriptional start site of the Pseudomonas aeruginosa outer membrane porin protein F gene.
Year: 1988
Journal: J Bacteriol
Volume: 170
Pages: 155-62
SO Term
Description: A region defined by a cluster of experimentally determined transcription starting sites.
GO Term
Description: An epigenetic gene regulation mechanism that negatively regulates gene expression by methylation of cytosine residues in chromosomal CpG islands. CpG islands are genomic regions that contain a high frequency of the CG dinucleotide and are often associated with the transcription start site of genes.
GO Term
Description: An epigenetic gene regulation mechanism that positively regulates gene expression by demethylation of cytosine residues in chromosomal CpG islands. CpG islands are genomic regions that contain a high frequency of the CG dinucleotide and are often associated with the transcription start site of genes.
Gene
Length: 1787  
Chromosome Location: Chr2: 9248525-9250311
Organism . Short Name: A. thaliana
TAIR Computational Description: Adenine nucleotide alpha hydrolases-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes gene that is induced in response to desiccation; mRNA expression is seen 10 and 24 hrs after start of desiccation treatment.
TAIR Short Description: Adenine nucleotide alpha hydrolases-like superfamily protein
TAIR Aliases: RD2
Protein
Organism . Name: Arabidopsis thaliana
Length: 282  
Protein
Organism . Name: Arabidopsis thaliana
Length: 278  
Ontology Term Synonym
Name: transcription factor binding site amplification
Type: synonym
Ontology Term Synonym
Name: transcription factor binding site ablation
Type: synonym
Ontology Term Synonym
Name: transcription factor binding site translocation
Type: synonym
Ontology Term Synonym
Name: transcription factor binding site fusion
Type: synonym
Ontology Term Synonym
Name: general transcription factor binding site
Type: synonym
Ontology Term Synonym
Name: specific transcription factor binding site
Type: synonym
Ontology Term Synonym
Name: transcription termination site DNA binding
Type: synonym
Protein
Organism . Name: Arabidopsis thaliana
Length: 395  
Protein
Organism . Name: Arabidopsis thaliana
Length: 192  
Protein
Organism . Name: Arabidopsis thaliana
Length: 402  
Protein
Organism . Name: Arabidopsis thaliana
Length: 598  
Protein
Organism . Name: Arabidopsis thaliana
Length: 423  
Protein
Organism . Name: Arabidopsis thaliana
Length: 433  
Protein
Organism . Name: Arabidopsis thaliana
Length: 465  
Protein
Organism . Name: Arabidopsis thaliana
Length: 541  
Protein
Organism . Name: Arabidopsis thaliana
Length: 778  
Protein
Organism . Name: Arabidopsis thaliana
Length: 242  
Protein
Organism . Name: Arabidopsis thaliana
Length: 449  
Protein
Organism . Name: Arabidopsis thaliana
Length: 385  
Protein
Organism . Name: Arabidopsis thaliana
Length: 403  
Protein
Organism . Name: Arabidopsis thaliana
Length: 596  
Protein
Organism . Name: Arabidopsis thaliana
Length: 426  
Protein
Organism . Name: Arabidopsis thaliana
Length: 433  
Protein
Organism . Name: Arabidopsis thaliana
Length: 465  
Protein
Organism . Name: Arabidopsis thaliana
Length: 541  
Protein
Organism . Name: Arabidopsis thaliana
Length: 260  
Protein
Organism . Name: Arabidopsis thaliana
Length: 119  
Protein
Organism . Name: Arabidopsis thaliana
Length: 778  
Protein
Organism . Name: Arabidopsis thaliana
Length: 778  
Protein
Organism . Name: Arabidopsis thaliana
Length: 449  
Protein
Organism . Name: Arabidopsis thaliana
Length: 546  
Protein
Organism . Name: Arabidopsis thaliana
Length: 433  
Protein
Organism . Name: Arabidopsis thaliana
Length: 423  
Protein Domain
Protein Domain
Ontology Term Synonym
Name: coding start
Type: synonym
Ontology Term Synonym
Name: translation start
Type: synonym
Ontology Term Synonym
Name: start codon
Type: synonym
Publication
First Author: Chen C
Title: RNA polymerase II-independent recruitment of SPT6L at transcription start sites in Arabidopsis.
Year: 2019
Journal: Nucleic Acids Res
Volume: 47
Pages: 6714-6725
SO Term
Description: A start codon that is not the usual AUG sequence.