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Search results 1 to 100 out of 6293 for Single Nucleotide Polymorphism

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Type Details Score
SO Term
SO:0000694 | SNP
Description: SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(s), wherein the least frequent variant has an abundance of 1% or greater.
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Ontology Term Synonym
Ontology Term Synonym
Name: single nucleotide polymorphism
Type: synonym
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The causative single nucleotide polymorphism changing a splicing site in ARMADILLO REPEAT-CONTAINING KINESIN1.
Organism: A. thaliana
Gene: MRH2
PubMed Id: 25248719
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Ontology Term Synonym
Ontology Term Synonym
Name: single amino-acid polymorphism
Type: synonym
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Interaction Term
MI:1239 | amino-acid variant
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SO Term
SO:0001013 | MNP
Description: A multiple nucleotide polymorphism with alleles of common length > 1, for example AAA/TTT.
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Ontology Term Synonym
Ontology Term Synonym
Name: multiple nucleotide polymorphism
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: disease single amino acid polymorphism
Type: synonym
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Protein Domain
IPR007608
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SO Term
SO:0001483 | SNV
Description: SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist.
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Ontology Term Synonym
Ontology Term Synonym
Name: single nucleotide variant
Type: synonym
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Interaction Term
MI:1240 | disease causing amino-acid variant
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Gene
AT1G32470 | locus:2033802 | AT1G32470 | -
Length: 1096  
Chromosome Location: Chr1: 11739304-11740399
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
TAIR Aliases: GDC-H1
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Gene
AT2G35120 | locus:2063464 | AT2G35120 | -
 
Length: 1768  
Chromosome Location: Chr2: 14805639-14807406
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
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Gene
AT1G52670 | locus:2035149 | AT1G52670 | -
Length: 2681  
Chromosome Location: Chr1: 19614931-19617611
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
TAIR Aliases: BADC2, BLP1
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Gene
AT1G75980 | locus:2204375 | AT1G75980 | -
 
Length: 1865  
Chromosome Location: Chr1: 28522554-28524418
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
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Gene
AT3G15690 | locus:2093237 | AT3G15690 | -
Length: 3206  
Chromosome Location: Chr3: 5316916-5320121
Organism . Short Name: A. thaliana
TAIR Computational Description: Single hybrid motif superfamily protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Single hybrid motif superfamily protein
TAIR Aliases: BADC3, BLP2
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Publication
16702412
First Author: West MA
Title: High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis.
Year: 2006
Journal: Genome Res
Volume: 16
Pages: 787-95
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Publication
17656846
First Author: Du J
Title: Unique nucleotide polymorphism of ankyrin gene cluster in Arabidopsis.
Year: 2007
Journal: J Genet
Volume: 86
Pages: 27-35
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: the RPS5 polymorphism may not be maintained through a tightly coupled interaction involving a single coevolved R gene and effector pair; more likely, the stable polymorphism is maintained through complex and diffuse community-wide interactions
Organism: A. thaliana
Gene: RPS5
PubMed Id: 25043057
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Gene
AT2G41880 | locus:2054356 | GK-1 | guanylate kinase 1
Length: 2785  
Chromosome Location: Chr2: 17474527-17477311
Organism . Short Name: A. thaliana
TAIR Computational Description: guanylate kinase 1;(source:Araport11)
TAIR Curator Summary: Guanylate kinase. Involved in nucleotide metabolism.
TAIR Short Description: guanylate kinase 1
TAIR Aliases: AGK1, GK-1
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Gene
AT1G12805 | locus:1006230680 | AT1G12805 | -
 
Length: 560  
Chromosome Location: Chr1: 4366577-4367136
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide binding protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: nucleotide binding
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Gene
AT2G01330 | locus:2038761 | AT2G01330 | -
Length: 2688  
Chromosome Location: Chr2: 158183-160870
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide binding protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: nucleotide binding
TAIR Aliases: AIP1-1
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Gene
AT3G51950 | locus:2083740 | AT3G51950 | -
 
Length: 3800  
Chromosome Location: Chr3: 19277594-19281393
Organism . Short Name: A. thaliana
TAIR Computational Description: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary: Contains single CCCH domain.
TAIR Short Description: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
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Gene
AT4G30360 | locus:2118816 | CNGC17 | cyclic nucleotide-gated channel 17
Length: 3326  
Chromosome Location: Chr4: 14854694-14858019
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channel 17;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide-gated channel 17
TAIR Aliases: ATCNGC17, CNGC17
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Gene
AT4G39390 | locus:2122467 | NST-K1 | nucleotide sugar transporter-KT 1
Length: 2682  
Chromosome Location: Chr4: 18315545-18318226
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide sugar transporter-KT 1;(source:Araport11)
TAIR Curator Summary: Encodes a golgi localized nucleotide sugar transporter.
TAIR Short Description: nucleotide sugar transporter-KT 1
TAIR Aliases: ATNST-KT1, NST-K1, URGT4
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Gene
AT3G17690 | locus:2090562 | CNGC19 | cyclic nucleotide gated channel 19
Length: 3528  
Chromosome Location: Chr3: 6045002-6048529
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 19;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide gated channel 19
TAIR Aliases: ATCNGC19, CNGC19
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Gene
AT3G48010 | locus:2097860 | CNGC16 | cyclic nucleotide-gated channel 16
Length: 3004  
Chromosome Location: Chr3: 17721137-17724140
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channel 16;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide-gated channel 16
TAIR Aliases: ATCNGC16, CNGC16
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Gene
AT4G01010 | locus:2125206 | CNGC13 | cyclic nucleotide-gated channel 13
Length: 3389  
Chromosome Location: Chr4: 434217-437605
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide-gated channel 13;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide-gated channel 13
TAIR Aliases: ATCNGC13, CNGC13
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Gene
AT5G53130 | locus:2163776 | CNGC1 | cyclic nucleotide gated channel 1
Length: 3309  
Chromosome Location: Chr5: 21537721-21541029
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 1;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family
TAIR Short Description: cyclic nucleotide gated channel 1
TAIR Aliases: ATCNGC1, CNGC1
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Gene
AT4G15475 | locus:505006471 | AT4G15475 | -
Length: 3058  
Chromosome Location: Chr4: 8845812-8848869
Organism . Short Name: A. thaliana
TAIR Computational Description: F-box/RNI-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Contributes to UV tolerance through nucleotide excision repair.
TAIR Short Description: F-box/RNI-like superfamily protein
TAIR Aliases: RAD7b
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Gene
AT2G06040 | locus:2051542 | AT2G06040 | -
Length: 3453  
Chromosome Location: Chr2: 2352145-2355597
Organism . Short Name: A. thaliana
TAIR Computational Description: F-box/LRR protein;(source:Araport11)
TAIR Curator Summary: Contributes to UV tolerance through nucleotide excision repair.
TAIR Short Description: NULL
TAIR Aliases: RAD7a
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Gene
AT5G21900 | locus:504956457 | AT5G21900 | -
Length: 2362  
Chromosome Location: Chr5: 7238174-7240535
Organism . Short Name: A. thaliana
TAIR Computational Description: RNI-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Contributes to UV tolerance through nucleotide excision repair.
TAIR Short Description: RNI-like superfamily protein
TAIR Aliases: RAD7c
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Gene
AT3G05210 | locus:2096329 | ERCC1 | -
Length: 2704  
Chromosome Location: Chr3: 1479339-1482042
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide repair protein;(source:Araport11)
TAIR Curator Summary: encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.
TAIR Short Description: nucleotide repair protein, putative
TAIR Aliases: ERCC1, UVR7
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Gene
AT1G80300 | locus:2034235 | NTT1 | nucleotide transporter 1
Length: 3068  
Chromosome Location: Chr1: 30191538-30194605
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide transporter 1;(source:Araport11)
TAIR Curator Summary: Encodes an ATP/ADP transporter. The mRNA is cell-to-cell mobile.
TAIR Short Description: nucleotide transporter 1
TAIR Aliases: ATNTT1, NTT1
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Publication
12534212
First Author: Kamiya T
Title: Nucleotide polymorphism at the Atmyb2 locus of the wild plant Arabidopsis thaliana.
Year: 2002
Journal: Genet Res
Volume: 80
Pages: 89-98
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: a single natural intronic polymorphism in one haplotype affects FLC expression and thus flowering by specifically changing splicing of the FLC antisense transcript COOLAIR.
Organism: A. thaliana
Gene: FLC
PubMed Id: 25805848
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Gene
AT4G28450 | locus:2121328 | AT4G28450 | -
 
Length: 3306  
Chromosome Location: Chr4: 14061403-14064708
Organism . Short Name: A. thaliana
TAIR Computational Description: WD repeat and SOF domain-containing protein 1;(source:Araport11)
TAIR Curator Summary: This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase
TAIR Short Description: nucleotide binding;protein binding
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Gene
AT1G12700 | locus:2195103 | RPF1 | RNA processing factor 1
Length: 2845  
Chromosome Location: Chr1: 4323533-4326377
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA processing FACTOR;(source:Araport11)
TAIR Curator Summary: Encodes RNA PROCESSING FACTOR 1 (RPF1), a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5?-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5′-end, contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler. Required for the formation of nad4L-atp4 transcripts with -318 5′ termini.
TAIR Short Description: ATP binding;nucleic acid binding;helicases
TAIR Aliases: RPF1
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Ontology Term Synonym
Ontology Term Synonym
Name: copy number polymorphism
Type: synonym
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Gene
AT4G14330 | locus:2129630 | AT4G14330 | -
Length: 3442  
Chromosome Location: Chr4: 8244053-8247494
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Orphan kinesin with processive motility on single microtubules.
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: PAKRP2
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Publication
18627499
First Author: Shindo C
Title: Intraspecific competition reveals conditional fitness effects of single gene polymorphism at the Arabidopsis root growth regulator BRX.
Year: 2008
Journal: New Phytol
Volume: 180
Pages: 71-80
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Gene
AT1G70330 | locus:2016119 | ENT1 | equilibrative nucleotide transporter 1
Length: 1711  
Chromosome Location: Chr1: 26502909-26504619
Organism . Short Name: A. thaliana
TAIR Computational Description: equilibrative nucleotide transporter 1;(source:Araport11)
TAIR Curator Summary: encodes an adenosine transporter that catalyze a proton-dependent adenosine transport. The mRNA is cell-to-cell mobile.
TAIR Short Description: equilibrative nucleotide transporter 1
TAIR Aliases: ENT1, ENT1,AT
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Gene
AT4G01100 | locus:2125073 | ADNT1 | adenine nucleotide transporter 1
Length: 2888  
Chromosome Location: Chr4: 477141-480028
Organism . Short Name: A. thaliana
TAIR Computational Description: adenine nucleotide transporter 1;(source:Araport11)
TAIR Curator Summary: Adenine nucleotide transporter. Located in mitochondrion. Expressed in a broad range of tissues, but predominantly in root tips. Loss of function mutants exhibit reduced root growth and respiration.
TAIR Short Description: adenine nucleotide transporter 1
TAIR Aliases: ADNT1
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Gene
AT5G50960 | locus:2157328 | NBP35 | nucleotide binding protein 35
Length: 2003  
Chromosome Location: Chr5: 20734136-20736138
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide binding protein 35;(source:Araport11)
TAIR Curator Summary: Highly similar to Saccharomyces cerevisiae NBP35, locus YGL091C. Cytosolic protein that homodimerizes and can assemble both 4Fe-4S - type and 2Fe-2S - type clusters on its amino terminal and carboxy therminal respectively. Null mutants are embryo lethal.
TAIR Short Description: nucleotide binding protein 35
TAIR Aliases: ATNBP35, NBP35
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Publication
18273534
First Author: Moore RC
Title: Local patterns of nucleotide polymorphism are highly variable in the selfing species Arabidopsis thaliana.
Year: 2008
Journal: J Mol Evol
Volume: 66
Pages: 116-29
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Protein
A0A1I9LMU4_ARATH | A0A1I9LMU4
Organism . Name: Arabidopsis thaliana
Length: 249  
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Protein
A0A1P8AVM1_ARATH | A0A1P8AVM1
Organism . Name: Arabidopsis thaliana
Length: 173  
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Protein
F4J017_ARATH | F4J017
Organism . Name: Arabidopsis thaliana
Length: 247  
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Protein
Q8GRT9_ARATH | Q8GRT9
Organism . Name: Arabidopsis thaliana
Length: 263  
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Publication
25941313
First Author: Luo Y
Title: A Single Nucleotide Deletion in Gibberellin20-oxidase1 Causes Alpine Dwarfism in Arabidopsis.
Year: 2015
Journal: Plant Physiol
Volume: 168
Pages: 930-7
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Gene
AT1G13870 | locus:2014804 | DRL1 | DEFORMED ROOTS AND LEAVES 1
Length: 1481  
Chromosome Location: Chr1: 4747186-4748666
Organism . Short Name: A. thaliana
TAIR Computational Description: KTI12-like, chromatin associated protein;(source:Araport11)
TAIR Curator Summary: Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots. Mutants also have no ncm5U (5-carbamoylmethyluridine).
TAIR Short Description: calmodulin binding;purine nucleotide binding
TAIR Aliases: AtKTI12, DRL1
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Gene
AT1G21320 | locus:2014937 | AT1G21320 | -
Length: 3838  
Chromosome Location: Chr1: 7462327-7466164
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleic acid/nucleotide binding protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: nucleotide binding;nucleic acid binding
TAIR Aliases: NSRb
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Gene
AT2G35080 | locus:2063394 | AT2G35080 | -
 
Length: 2204  
Chromosome Location: Chr2: 14789245-14791448
Organism . Short Name: A. thaliana
TAIR Computational Description: ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: nucleotide binding;ATP binding;aminoacyl-tRNA ligases
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Publication
18493073
First Author: Hazzouri KM
Title: Contrasting patterns of transposable-element insertion polymorphism and nucleotide diversity in autotetraploid and allotetraploid Arabidopsis species.
Year: 2008
Journal: Genetics
Volume: 179
Pages: 581-92
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Publication
9402740
First Author: Kawabe A
Title: Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thaliana.
Year: 1997
Journal: Mol Biol Evol
Volume: 14
Pages: 1303-15
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Ontology Term
- | Nuclease
Description: Enzyme that degrades nucleic acids into shorter oligonucleotides or single nucleotide subunits by hydrolyzing sugar-phosphate bonds in the nucleic acid backbone
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Gene
AT5G57520 | locus:2174547 | ZFP2 | zinc finger protein 2
Length: 1125  
Chromosome Location: Chr5: 23295652-23296776
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 2;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 2
TAIR Aliases: ATZFP2, ZFP2
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Gene
AT1G24625 | locus:2825107 | ZFP7 | zinc finger protein 7
Length: 1424  
Chromosome Location: Chr1: 8725789-8727212
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 7;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 7
TAIR Aliases: ZFP7
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Gene
AT1G66140 | locus:2013820 | ZFP4 | zinc finger protein 4
Length: 2288  
Chromosome Location: Chr1: 24619830-24622117
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 4;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 4
TAIR Aliases: ZFP4
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Gene
AT5G25160 | locus:2146960 | ZFP3 | zinc finger protein 3
Length: 1228  
Chromosome Location: Chr5: 8687188-8688415
Organism . Short Name: A. thaliana
TAIR Computational Description: zinc finger protein 3;(source:Araport11)
TAIR Curator Summary: Encodes a zinc finger protein containing only a single zinc finger.
TAIR Short Description: zinc finger protein 3
TAIR Aliases: ZFP3
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Gene
AT1G01340 | locus:2035347 | CNGC10 | cyclic nucleotide gated channel 10
Length: 3655  
Chromosome Location: Chr1: 132270-135924
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 10;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family, regulated by Bacillus amyloliquefaciens under high calcium stress.
TAIR Short Description: cyclic nucleotide gated channel 10
TAIR Aliases: ACBK1, ATCNGC10, CNGC10
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Gene
AT2G16570 | locus:2045081 | ASE1 | GLN phosphoribosyl pyrophosphate amidotransferase 1
Length: 2146  
Chromosome Location: Chr2: 7180142-7182287
Organism . Short Name: A. thaliana
TAIR Computational Description: GLN phosphoribosyl pyrophosphate amidotransferase 1;(source:Araport11)
TAIR Curator Summary: Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis
TAIR Short Description: GLN phosphoribosyl pyrophosphate amidotransferase 1
TAIR Aliases: ASE1, ATASE, ATASE1
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Gene
AT5G57940 | locus:2174448 | CNGC5 | cyclic nucleotide gated channel 5
Length: 4057  
Chromosome Location: Chr5: 23456565-23460621
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 5;(source:Araport11)
TAIR Curator Summary: Encodes a cyclic GMP activated Ca2+-permeable cation channel in the plasma membrane of guard cells. Required for constitutive growth of root hairs as Ca2+-permeable channels.
TAIR Short Description: cyclic nucleotide gated channel 5
TAIR Aliases: ATCNGC5, CNGC5
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Gene
AT1G07290 | locus:2025047 | GONST2 | golgi nucleotide sugar transporter 2
Length: 2981  
Chromosome Location: Chr1: 2242012-2244992
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 2;(source:Araport11)
TAIR Curator Summary: Encodes a GDP-mannose transporter.
TAIR Short Description: golgi nucleotide sugar transporter 2
TAIR Aliases: GONST2
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Gene
AT1G15990 | locus:2200502 | CNGC7 | cyclic nucleotide gated channel 7
Length: 3060  
Chromosome Location: Chr1: 5491133-5494192
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 7;(source:Araport11)
TAIR Curator Summary: Encodes a plasma membrane localized member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.
TAIR Short Description: cyclic nucleotide gated channel 7
TAIR Aliases: ATCNGC7, CNGC7
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Gene
AT1G19780 | locus:2013139 | CNGC8 | cyclic nucleotide gated channel 8
Length: 2965  
Chromosome Location: Chr1: 6833669-6836633
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 8;(source:Araport11)
TAIR Curator Summary: Encodes a member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.
TAIR Short Description: cyclic nucleotide gated channel 8
TAIR Aliases: ATCNGC8, CNGC8
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Gene
AT1G21870 | locus:2201138 | GONST5 | golgi nucleotide sugar transporter 5
Length: 1636  
Chromosome Location: Chr1: 7678208-7679843
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 5;(source:Araport11)
TAIR Curator Summary: Encodes a Golgi-localized nucleotide-sugar transporter.
TAIR Short Description: golgi nucleotide sugar transporter 5
TAIR Aliases: GONST5
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Gene
AT2G46430 | locus:2039084 | CNGC3 | cyclic nucleotide gated channel 3
Length: 3494  
Chromosome Location: Chr2: 19057999-19061492
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 3;(source:Araport11)
TAIR Curator Summary: Encodes a cyclic nucleotide gated channel, downstream component of the signaling pathways leading to hypersensitive response (HR) resistance.
TAIR Short Description: cyclic nucleotide gated channel 3
TAIR Aliases: ATCNGC3, CNGC3, CNGC3.C
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Gene
AT3G05290 | locus:2096344 | PNC1 | peroxisomal adenine nucleotide carrier 1
Length: 2005  
Chromosome Location: Chr3: 1505831-1507835
Organism . Short Name: A. thaliana
TAIR Computational Description: peroxisomal adenine nucleotide carrier 1;(source:Araport11)
TAIR Curator Summary: encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.
TAIR Short Description: peroxisomal adenine nucleotide carrier 1
TAIR Aliases: AtPNC1, PNC1
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Gene
AT4G30560 | locus:2118836 | CNGC9 | cyclic nucleotide gated channel 9
Length: 3522  
Chromosome Location: Chr4: 14926834-14930355
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclic nucleotide gated channel 9;(source:Araport11)
TAIR Curator Summary: member of Cyclic nucleotide gated channel family. Required for constitutive growth of root hairs as Ca2+-permeable channels.
TAIR Short Description: cyclic nucleotide gated channel 9
TAIR Aliases: ATCNGC9, CNGC9
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Gene
AT1G49290 | locus:2010277 | AT1G49290 | -
Length: 1274  
Chromosome Location: Chr1: 18232407-18233680
Organism . Short Name: A. thaliana
TAIR Computational Description: Rho guanine nucleotide exchange factor;(source:Araport11)
TAIR Curator Summary: Paternally expressed gene that is localized around the sperm nuclei of pollen. PEG2 acts as a sponge for siRNA854 during endosperm development, this action is necessary to induce triploid seed abortion.
TAIR Short Description: NULL
TAIR Aliases: PEG2
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Gene
AT1G76340 | locus:2014634 | GONST3 | golgi nucleotide sugar transporter 3
Length: 2088  
Chromosome Location: Chr1: 28634881-28636968
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 3;(source:Araport11)
TAIR Curator Summary: Encodes a nucleotide-sugar transporter. It is is likely the primary Golgi GDP-L-galactose transporter, and provides GDP-L-galactose for RG-II biosynthesis. Knockout lines are lethal. RNAi suppressor lines were used for analysis. GDP-L-Galactose transport was affected. This process was required for pectic RG-II biosynthesis.
TAIR Short Description: golgi nucleotide sugar transporter 3
TAIR Aliases: GGLT1, GONST3
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Gene
AT3G58800 | locus:2099059 | AT3G58800 | -
 
Length: 1701  
Chromosome Location: Chr3: 21748228-21749928
Organism . Short Name: A. thaliana
TAIR Computational Description: secretion-regulating guanine nucleotide exchange factor;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT2G13650 | locus:2054090 | GONST1 | golgi nucleotide sugar transporter 1
Length: 3480  
Chromosome Location: Chr2: 5687316-5690795
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 1;(source:Araport11)
TAIR Curator Summary: Encodes a Golgi-localized GDP-mannose transporter. It can transport ADP-glucose in vitro.
TAIR Short Description: golgi nucleotide sugar transporter 1
TAIR Aliases: GONST1
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Gene
AT5G17400 | locus:2178925 | ER-ANT1 | endoplasmic reticulum-adenine nucleotide transporter 1
Length: 1642  
Chromosome Location: Chr5: 5728789-5730430
Organism . Short Name: A. thaliana
TAIR Computational Description: endoplasmic reticulum-adenine nucleotide transporter 1;(source:Araport11)
TAIR Curator Summary: This gene is predicted to encode an ER-localized adenine nucleotide transporter with six putative transmembrane helices. It appears to act as a ATP:ADP antiporter when expressed in E.coli plasma membranes. Transcript levels for several ER-localized chaperones (e.g. BIP1/2) and other ATP-requiring ER proteins (e.g. CPK2) are reduced in er-ant1 knock-out lines, suggesting a lack of adequate ATP transport into the ER in these mutants. They also have reduced seed oil and seed protein levels.
TAIR Short Description: endoplasmic reticulum-adenine nucleotide transporter 1
TAIR Aliases: ER-ANT1
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Gene
AT5G19980 | locus:2147655 | GONST4 | golgi nucleotide sugar transporter 4
Length: 1540  
Chromosome Location: Chr5: 6749613-6751152
Organism . Short Name: A. thaliana
TAIR Computational Description: golgi nucleotide sugar transporter 4;(source:Araport11)
TAIR Curator Summary: Encodes a Golgi-localized nucleotide-sugar transporter.
TAIR Short Description: golgi nucleotide sugar transporter 4
TAIR Aliases: GFT1, GONST4
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Gene
AT5G27520 | locus:2146355 | PNC2 | peroxisomal adenine nucleotide carrier 2
Length: 2071  
Chromosome Location: Chr5: 9714348-9716418
Organism . Short Name: A. thaliana
TAIR Computational Description: peroxisomal adenine nucleotide carrier 2;(source:Araport11)
TAIR Curator Summary: encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.
TAIR Short Description: peroxisomal adenine nucleotide carrier 2
TAIR Aliases: AtPNC2, PNC2
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Ontology Term Synonym
Ontology Term Synonym
Name: simple sequence length polymorphism
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: amplified fragment length polymorphism
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: restriction fragment length polymorphism
Type: synonym
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Gene
AT4G32400 | locus:2127851 | SHS1 | SODIUM HYPERSENSITIVE 1
Length: 2165  
Chromosome Location: Chr4: 15638353-15640517
Organism . Short Name: A. thaliana
TAIR Computational Description: Mitochondrial substrate carrier family protein;(source:Araport11)
TAIR Curator Summary: Encodes a plastidial nucleotide uniport carrier protein required to export newly synthesized adenylates into the cytosol.
TAIR Short Description: Mitochondrial substrate carrier family protein
TAIR Aliases: ATBT1, BR1, EMB104, EMB42, SHS1
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Gene
AT1G17520 | locus:2007878 | AT1G17520 | -
 
Length: 2930  
Chromosome Location: Chr1: 6024636-6027565
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
TAIR Curator Summary: Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.
TAIR Short Description: Homeodomain-like/winged-helix DNA-binding family protein
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Gene
AT1G72740 | locus:2030275 | AT1G72740 | -
 
Length: 2665  
Chromosome Location: Chr1: 27380260-27382924
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like/winged-helix DNA-binding family protein;(source:Araport11)
TAIR Curator Summary: Single Myb Histone (SMH) gene family member. Contains terminal acidic SANT domain.
TAIR Short Description: Homeodomain-like/winged-helix DNA-binding family protein
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Protein
Q84WJ3_ARATH | Q84WJ3
Organism . Name: Arabidopsis thaliana
Length: 457  
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Protein
Q94K08_ARATH | Q94K08
Organism . Name: Arabidopsis thaliana
Length: 234  
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Protein
Q9SU82_ARATH | Q9SU82
Organism . Name: Arabidopsis thaliana
Length: 457  
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Protein
A0A1I9LSV8_ARATH | A0A1I9LSV8
Organism . Name: Arabidopsis thaliana
Length: 294  
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Gene
AT2G32150 | locus:2045422 | AT2G32150 | -
Length: 2061  
Chromosome Location: Chr2: 13658888-13660948
Organism . Short Name: A. thaliana
TAIR Computational Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a xanthosine monophosphate (XMP)phosphatase. Dephosphorylates XMP to xanthosine as an initial step in purine nucleotide catabolism.
TAIR Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
TAIR Aliases: XMPP
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Gene
AT5G63020 | locus:2166320 | AT5G63020 | -
Length: 3059  
Chromosome Location: Chr5: 25283063-25286121
Organism . Short Name: A. thaliana
TAIR Computational Description: Disease resistance protein (CC-NBS-LRR class) family;(source:Araport11)
TAIR Curator Summary: Nucleotide binding leucine rich repeat protein of the C-NB-LRR (CNL) type. Involved in TOPP4 mediated immune response.
TAIR Short Description: Disease resistance protein (CC-NBS-LRR class) family
TAIR Aliases: SUT1
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Gene
AT1G15710 | locus:2036164 | AT1G15710 | -
Length: 1781  
Chromosome Location: Chr1: 5404130-5405910
Organism . Short Name: A. thaliana
TAIR Computational Description: prephenate dehydrogenase family protein;(source:Araport11)
TAIR Curator Summary: Plastidic arogenate dehydrogenase with minimal prephenate dehydrogenase activity. Contains a single catalytic domain.
TAIR Short Description: prephenate dehydrogenase family protein
TAIR Aliases: TyrA2
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Gene
AT4G19610 | locus:2122990 | AT4G19610 | -
 
Length: 4572  
Chromosome Location: Chr4: 10677202-10681773
Organism . Short Name: A. thaliana
TAIR Computational Description: nucleotide/nucleic acid binding protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: nucleotide binding;nucleic acid binding;RNA binding
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Publication
24983760
First Author: Kelly JN
Title: In silico analysis of functional single nucleotide polymorphisms in the human TRIM22 gene.
Year: 2014
Journal: PLoS One
Volume: 9
Pages: e101436
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Publication
16518568
First Author: Li CS
Title: Identification of single nucleotide polymorphisms in FOXJ1 and their association with allergic rhinitis.
Year: 2006
Journal: J Hum Genet
Volume: 51
Pages: 292-297
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A previously identified Pi overaccumulator, pho2, is caused by a single nucleotide mutation resulting in early termination within the UBC24 gene.
Organism: A. thaliana
Gene: PHO2
PubMed Id: 16679417
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Gene
AT5G58030 | locus:2147770 | AT5G58030 | -
Length: 1844  
Chromosome Location: Chr5: 23486777-23488620
Organism . Short Name: A. thaliana
TAIR Computational Description: Transport protein particle (TRAPP) component;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Transport protein particle (TRAPP) component
TAIR Aliases: TRAPPC5
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Gene
AT2G20930 | locus:2051457 | AT2G20930 | -
Length: 1388  
Chromosome Location: Chr2: 9000450-9001837
Organism . Short Name: A. thaliana
TAIR Computational Description: SNARE-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: SNARE-like superfamily protein
TAIR Aliases: tTRAPPC2(L)
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Gene
AT2G47960 | locus:2043433 | AT2G47960 | -
Length: 3725  
Chromosome Location: Chr2: 19625459-19629183
Organism . Short Name: A. thaliana
TAIR Computational Description: trafficking protein particle complex subunit-like protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: NULL
TAIR Aliases: TRAPPC13
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Gene
AT3G05000 | locus:2114850 | AT3G05000 | -
Length: 1657  
Chromosome Location: Chr3: 1387175-1388831
Organism . Short Name: A. thaliana
TAIR Computational Description: Transport protein particle (TRAPP) component;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Transport protein particle (TRAPP) component
TAIR Aliases: TRAPPC6, TRS33
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Gene
AT4G39820 | locus:2135227 | AT4G39820 | -
Length: 2115  
Chromosome Location: Chr4: 18475946-18478060
Organism . Short Name: A. thaliana
TAIR Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
TAIR Aliases: TRAPPC12
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