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Search results 1 to 100 out of 1642 for Quantitative Trait Locus

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Type Details Score
SO Term
SO:0000771 | QTL
Description: A quantitative trait locus (QTL) is a polymorphic locus which contains alleles that differentially affect the expression of a continuously distributed phenotypic trait. Usually it is a marker described by statistical association to quantitative variation in the particular phenotypic trait that is thought to be controlled by the cumulative action of alleles at multiple loci.
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Ontology Term Synonym
Ontology Term Synonym
Name: quantitative trait locus
Type: synonym
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Gene
AT4G37630 | locus:2120081 | CYCD5;1 | cyclin d5;1
Length: 2097  
Chromosome Location: Chr4: 17679168-17681264
Organism . Short Name: A. thaliana
TAIR Computational Description: cyclin d5;(source:Araport11)
TAIR Curator Summary: core cell cycle genes; a quantitative trait gene for endoreduplication.
TAIR Short Description: cyclin d5;1
TAIR Aliases: CYCD5;1
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Publication
17065317
First Author: Bentsink L
Title: Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis.
Year: 2006
Journal: Proc Natl Acad Sci U S A
Volume: 103
Pages: 17042-7
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Publication
20212128
First Author: Ren Z
Title: RAS1, a quantitative trait locus for salt tolerance and ABA sensitivity in Arabidopsis.
Year: 2010
Journal: Proc Natl Acad Sci U S A
Volume: 107
Pages: 5669-74
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Publication
12595690
First Author: Kim UK
Title: Positional cloning of the human quantitative trait locus underlying taste sensitivity to phenylthiocarbamide.
Year: 2003
Journal: Science
Volume: 299
Pages: 1221-5
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Publication
14583591
First Author: Zhang Z
Title: Positional cloning of the major quantitative trait locus underlying lung tumor susceptibility in mice.
Year: 2003
Journal: Proc Natl Acad Sci U S A
Volume: 100
Pages: 12642-7
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Publication
18631293
First Author: Waters BM
Title: Quantitative trait locus mapping for seed mineral concentrations in two Arabidopsis thaliana recombinant inbred populations.
Year: 2008
Journal: New Phytol
Volume: 179
Pages: 1033-1047
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: CYCD5;1 is a quantitative trait gene for endoreduplication in Arabidopsis
Organism: A. thaliana
Gene: CYCD5;1
PubMed Id: 22392991
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Gene
AT5G45830 | locus:2152390 | DOG1 | DELAY OF GERMINATION 1
Length: 2089  
Chromosome Location: Chr5: 18589418-18591506
Organism . Short Name: A. thaliana
TAIR Computational Description: delay of germination 1;(source:Araport11)
TAIR Curator Summary: Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific.
TAIR Short Description: delay of germination 1
TAIR Aliases: ATDOG1, DOG1, GAAS5, GSQ5
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Publication
20404146
First Author: Beuchat J
Title: A hyperactive quantitative trait locus allele of Arabidopsis BRX contributes to natural variation in root growth vigor.
Year: 2010
Journal: Proc Natl Acad Sci U S A
Volume: 107
Pages: 8475-80
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Publication
16679459
First Author: Zhang Z
Title: The gene controlling the quantitative trait locus EPITHIOSPECIFIER MODIFIER1 alters glucosinolate hydrolysis and insect resistance in Arabidopsis.
Year: 2006
Journal: Plant Cell
Volume: 18
Pages: 1524-36
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GO Term
GO:0065008 | regulation of biological quality
Description: Any process that modulates a qualitative or quantitative trait of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc.
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Publication
19293369
First Author: Pfalz M
Title: The gene controlling the indole glucosinolate modifier1 quantitative trait locus alters indole glucosinolate structures and aphid resistance in Arabidopsis.
Year: 2009
Journal: Plant Cell
Volume: 21
Pages: 985-99
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Publication
23807026
First Author: Bentolila S
Title: Quantitative trait locus mapping identifies REME2, a PPR-DYW protein required for editing of specific C targets in Arabidopsis mitochondria.
Year: 2013
Journal: RNA Biol
Volume: 10
Pages: 1520-5
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Publication
15695584
First Author: Werner JD
Title: Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation.
Year: 2005
Journal: Proc Natl Acad Sci U S A
Volume: 102
Pages: 2460-5
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Publication
11299358
First Author: Wang X
Title: Aspartate kinase 2. A candidate gene of a quantitative trait locus influencing free amino acid content in maize endosperm.
Year: 2001
Journal: Plant Physiol
Volume: 125
Pages: 1778-87
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Publication
11063709
First Author: Juenger T
Title: Quantitative trait loci for floral morphology in Arabidopsis thaliana.
Year: 2000
Journal: Genetics
Volume: 156
Pages: 1379-92
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Gene
AT5G22540 | locus:2171127 | AT5G22540 | -
 
Length: 1557  
Chromosome Location: Chr5: 7481397-7482953
Organism . Short Name: A. thaliana
TAIR Computational Description: transmembrane protein, putative (DUF247);(source:Araport11)
TAIR Curator Summary: Associated with a QTL for quantitative disease resistance.
TAIR Short Description: Plant protein of unknown function (DUF247)
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Publication
17435248
First Author: Ehrenreich IM
Title: The genetic architecture of shoot branching in Arabidopsis thaliana: a comparative assessment of candidate gene associations vs. quantitative trait locus mapping.
Year: 2007
Journal: Genetics
Volume: 176
Pages: 1223-36
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Publication
17434989
First Author: Courbot M
Title: A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4, a gene encoding a heavy metal ATPase.
Year: 2007
Journal: Plant Physiol
Volume: 144
Pages: 1052-65
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Publication
14506289
First Author: Kroymann J
Title: Evolutionary dynamics of an Arabidopsis insect resistance quantitative trait locus.
Year: 2003
Journal: Proc Natl Acad Sci U S A
Volume: 100 Suppl 2
Pages: 14587-92
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Publication
16714406
First Author: Mouille G
Title: Quantitative trait loci analysis of primary cell wall composition in Arabidopsis.
Year: 2006
Journal: Plant Physiol
Volume: 141
Pages: 1035-44
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Publication
17447913
First Author: Filatov V
Title: A quantitative trait loci analysis of zinc hyperaccumulation in Arabidopsis halleri.
Year: 2007
Journal: New Phytol
Volume: 174
Pages: 580-590
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Publication
16539601
First Author: Zhang L
Title: Mapping quantitative trait loci associated with selenate tolerance in Arabidopsis thaliana.
Year: 2006
Journal: New Phytol
Volume: 170
Pages: 33-42
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Publication
16244146
First Author: Alonso-Blanco C
Title: Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis.
Year: 2005
Journal: Plant Physiol
Volume: 139
Pages: 1304-12
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Publication
25490966
First Author: Amiguet-Vercher A
Title: The IBO germination quantitative trait locus encodes a phosphatase 2C-related variant with a nonsynonymous amino acid change that interferes with abscisic acid signaling.
Year: 2015
Journal: New Phytol
Volume: 205
Pages: 1076-1082
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Publication
25401959
First Author: Li W
Title: Identification of quantitative trait loci controlling high Calcium response in Arabidopsis thaliana.
Year: 2014
Journal: PLoS One
Volume: 9
Pages: e112511
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Publication
14671010
First Author: Sergeeva LI
Title: Histochemical analysis reveals organ-specific quantitative trait loci for enzyme activities in Arabidopsis.
Year: 2004
Journal: Plant Physiol
Volume: 134
Pages: 237-45
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SO Term
SO:0001774 | quantitative_variant
Description: A variant within a gene that contributes to a quantitative trait such as height or weight.
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Ontology Term Synonym
Ontology Term Synonym
Name: quantitative variant
Type: synonym
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Publication
12805622
First Author: Hoekenga OA
Title: Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait.
Year: 2003
Journal: Plant Physiol
Volume: 132
Pages: 936-48
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Gene
AT2G27750 | locus:2042119 | AT2G27750 | -
 
Length: 546  
Chromosome Location: Chr2: 11823916-11824461
Organism . Short Name: A. thaliana
TAIR Computational Description: Surfeit locus protein 6;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Surfeit locus protein 6
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Gene
AT4G14746 | locus:504955446 | AT4G14746 | -
 
Length: 2049  
Chromosome Location: Chr4: 8462437-8464485
Organism . Short Name: A. thaliana
TAIR Computational Description: neurogenic locus notch-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT4G15900 | locus:2005539 | PRL1 | pleiotropic regulatory locus 1
Length: 4143  
Chromosome Location: Chr4: 9023666-9027808
Organism . Short Name: A. thaliana
TAIR Computational Description: pleiotropic regulatory locus 1;(source:Araport11)
TAIR Curator Summary: Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10.
TAIR Short Description: pleiotropic regulatory locus 1
TAIR Aliases: PRL1, SCPR44
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Gene
AT5G05210 | locus:2156809 | AT5G05210 | -
 
Length: 2449  
Chromosome Location: Chr5: 1547412-1549860
Organism . Short Name: A. thaliana
TAIR Computational Description: Surfeit locus protein 6;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Surfeit locus protein 6
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Publication
21973058
First Author: Uptmoor R
Title: Prediction of flowering time in Brassica oleracea using a quantitative trait loci-based phenology model.
Year: 2012
Journal: Plant Biol (Stuttg)
Volume: 14
Pages: 179-89
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Publication
16461388
First Author: Darrah C
Title: Analysis of phase of LUCIFERASE expression reveals novel circadian quantitative trait loci in Arabidopsis.
Year: 2006
Journal: Plant Physiol
Volume: 140
Pages: 1464-74
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Publication
11861571
First Author: Borevitz JO
Title: Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana.
Year: 2002
Journal: Genetics
Volume: 160
Pages: 683-96
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Publication
21738591
First Author: Silady RA
Title: Variation in seed dormancy quantitative trait loci in Arabidopsis thaliana originating from one site.
Year: 2011
Journal: PLoS One
Volume: 6
Pages: e20886
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Publication
20217384
First Author: Yang M
Title: Quantitative trait loci for root morphology in response to low phosphorus stress in Brassica napus.
Year: 2010
Journal: Theor Appl Genet
Volume: 121
Pages: 181-93
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Publication
23136168
First Author: Capron A
Title: Identification of quantitative trait loci controlling fibre length and lignin content in Arabidopsis thaliana stems.
Year: 2013
Journal: J Exp Bot
Volume: 64
Pages: 185-97
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Publication
15238539
First Author: Wolyn DJ
Title: Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana.
Year: 2004
Journal: Genetics
Volume: 167
Pages: 907-17
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Publication
26103128
First Author: Chauvet C
Title: Two candidate genes for two quantitative trait loci epistatically attenuate hypertension in a novel pathway.
Year: 2015
Journal: J Hypertens
Volume: 33
Pages: 1791-801; discussion 1801
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Gene
AT5G14440 | locus:2145678 | AT5G14440 | -
 
Length: 2005  
Chromosome Location: Chr5: 4655903-4657907
Organism . Short Name: A. thaliana
TAIR Computational Description: Surfeit locus protein 2 (SURF2);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Surfeit locus protein 2 (SURF2)
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Gene
AT3G10390 | locus:2075870 | FLD | FLOWERING LOCUS D
Length: 3472  
Chromosome Location: Chr3: 3229060-3232531
Organism . Short Name: A. thaliana
TAIR Computational Description: protein FLOWERING locus D-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.
TAIR Short Description: Flavin containing amine oxidoreductase family protein
TAIR Aliases: FLD, RSI1
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Gene
AT5G40570 | locus:2168823 | AT5G40570 | -
 
Length: 1631  
Chromosome Location: Chr5: 16246760-16248390
Organism . Short Name: A. thaliana
TAIR Computational Description: Surfeit locus protein 2 (SURF2);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Surfeit locus protein 2 (SURF2)
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Gene
AT2G03050 | locus:2056745 | EMB93 | EMBRYO DEFECTIVE 93
Length: 1310  
Chromosome Location: Chr2: 899690-900999
Organism . Short Name: A. thaliana
TAIR Computational Description: Mitochondrial transcription termination factor family protein;(source:Araport11)
TAIR Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
TAIR Short Description: Mitochondrial transcription termination factor family protein
TAIR Aliases: EMB93, SOLDAT10
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Gene
AT5G22800 | locus:504954871 | EMB1030 | EMBRYO DEFECTIVE 1030
Length: 4532  
Chromosome Location: Chr5: 7615747-7620278
Organism . Short Name: A. thaliana
TAIR Computational Description: Alanyl-tRNA synthetase, class IIc;(source:Araport11)
TAIR Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
TAIR Short Description: Alanyl-tRNA synthetase, class IIc
TAIR Aliases: EMB1030, EMB263, EMB86
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Gene
AT5G27740 | locus:2180315 | EMB2775 | EMBRYO DEFECTIVE 2775
Length: 3731  
Chromosome Location: Chr5: 9823513-9827243
Organism . Short Name: A. thaliana
TAIR Computational Description: ATPase family associated with various cellular activities (AAA);(source:Araport11)
TAIR Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
TAIR Short Description: ATPase family associated with various cellular activities (AAA)
TAIR Aliases: EMB161, EMB251, EMB2775, RFC3, RFC5
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Gene
AT5G66055 | locus:505006718 | AKRP | ankyrin repeat protein
Length: 2208  
Chromosome Location: Chr5: 26417156-26419363
Organism . Short Name: A. thaliana
TAIR Computational Description: ankyrin repeat protein;(source:Araport11)
TAIR Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
TAIR Short Description: ankyrin repeat protein
TAIR Aliases: 123B, AKR, AKRP, EMB16, EMB2036, STT2
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Interaction Term
MI:2223 | inference by quantitative co-purification
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Publication
22392991
First Author: Sterken R
Title: Combined linkage and association mapping reveals CYCD5;1 as a quantitative trait gene for endoreduplication in Arabidopsis.
Year: 2012
Journal: Proc Natl Acad Sci U S A
Volume: 109
Pages: 4678-83
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Gene
AT2G33793 | locus:1006230129 | AT2G33793 | -
Length: 3616  
Chromosome Location: Chr2: 14296962-14300577
Organism . Short Name: A. thaliana
TAIR Computational Description: DNA ligase-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein component of the pre-synaptic chromosome axis. Mutants show quantitative defects in meiotic recombination. Interacts with ASY1/ASY3.
TAIR Short Description: NULL
TAIR Aliases: ASY4
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Publication
12618408
First Author: Loudet O
Title: Quantitative trait loci analysis of water and anion contents in interaction with nitrogen availability in Arabidopsis thaliana.
Year: 2003
Journal: Genetics
Volume: 163
Pages: 711-22
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Publication
16539600
First Author: Assunção AG
Title: Construction of a genetic linkage map of Thlaspi caerulescens and quantitative trait loci analysis of zinc accumulation.
Year: 2006
Journal: New Phytol
Volume: 170
Pages: 21-32
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Gene
AT5G10140 | locus:2184118 | FLC | FLOWERING LOCUS C
Length: 6067  
Chromosome Location: Chr5: 3173382-3179448
Organism . Short Name: A. thaliana
TAIR Computational Description: K-box region and MADS-box transcription factor family protein;(source:Araport11)
TAIR Curator Summary: MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.
TAIR Short Description: K-box region and MADS-box transcription factor family protein
TAIR Aliases: AGL25, FLC, FLF, RSB6
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Gene
AT1G65480 | locus:2034168 | FT | FLOWERING LOCUS T
Length: 2627  
Chromosome Location: Chr1: 24331373-24333999
Organism . Short Name: A. thaliana
TAIR Computational Description: PEBP (phosphatidylethanolamine-binding protein) family protein;(source:Araport11)
TAIR Curator Summary: FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). Together with TSF, it plays an antagonistic role to TFL1 in the determination of inflorescence meristem identity. FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.
TAIR Short Description: PEBP (phosphatidylethanolamine-binding protein) family protein
TAIR Aliases: FT, RSB8
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GO Term
GO:0021703 | locus ceruleus development
Description: The process whose specific outcome is the progression of the locus ceruleus over time, from its formation to the mature structure. The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic.
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Gene
AT1G24340 | locus:2032482 | EMB2421 | EMBRYO DEFECTIVE 2421
Length: 3800  
Chromosome Location: Chr1: 8635187-8638986
Organism . Short Name: A. thaliana
TAIR Computational Description: FAD/NAD(P)-binding oxidoreductase family protein;(source:Araport11)
TAIR Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. The mRNA is cell-to-cell mobile.
TAIR Short Description: FAD/NAD(P)-binding oxidoreductase family protein
TAIR Aliases: EMB2421, EMB260
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Gene
AT4G24270 | locus:2135892 | EMB140 | EMBRYO DEFECTIVE 140
Length: 5941  
Chromosome Location: Chr4: 12581518-12587458
Organism . Short Name: A. thaliana
TAIR Computational Description: EMBRYO DEFECTIVE 140;(source:Araport11)
TAIR Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. Splicing-related protein, promotes miRNA biogenesis.
TAIR Short Description: EMBRYO DEFECTIVE 140
TAIR Aliases: EMB140, SEAP1
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Ontology Term Synonym
Ontology Term Synonym
Name: inference by quantitative co-purification
Type: synonym
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Protein
NAC89_ARATH | Q94F58
Organism . Name: Arabidopsis thaliana
Length: 340  
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Ontology Term Synonym
Ontology Term Synonym
Name: locus name
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: microsatellite locus
Type: synonym
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Publication
16286447
First Author: Bentolila S
Title: Ecotype allelic variation in C-to-U editing extent of a mitochondrial transcript identifies RNA-editing quantitative trait loci in Arabidopsis.
Year: 2005
Journal: Plant Physiol
Volume: 139
Pages: 2006-16
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Gene
AT1G03545 | locus:6530298129 | AT1G03545 | -
 
Length: 2032  
Chromosome Location: Chr1: 885941-887972
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT1G03550;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT1G03550
TAIR Short Description: NULL
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Gene
AT2G31751 | locus:1009023153 | AT2G31751 | -
 
Length: 5136  
Chromosome Location: Chr2: 13497140-13502275
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT2G31750;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT2G31750
TAIR Short Description: unknown gene
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Gene
AT3G05932 | locus:5019474747 | AT3G05932 | -
 
Length: 3223  
Chromosome Location: Chr3: 1770239-1773461
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT3G05930;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT3G05930
TAIR Short Description: NULL
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Gene
AT1G48698 | locus:5019474651 | AT1G48698 | -
 
Length: 2392  
Chromosome Location: Chr1: 18010497-18012888
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT1G48700;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT1G48700
TAIR Short Description: NULL
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Gene
AT1G71828 | locus:5019474671 | AT1G71828 | -
 
Length: 515  
Chromosome Location: Chr1: 27017801-27018315
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT1G71830;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT1G71830
TAIR Short Description: NULL
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Gene
AT1G74545 | locus:5019474673 | AT1G74545 | -
 
Length: 2709  
Chromosome Location: Chr1: 28013118-28015826
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT1G74540;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT1G74540
TAIR Short Description: NULL
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Gene
AT2G04852 | locus:5019474684 | AT2G04852 | -
 
Length: 1318  
Chromosome Location: Chr2: 1705148-1706465
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT2G04850;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT2G04850
TAIR Short Description: NULL
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Gene
AT2G05914 | locus:6530298177 | AT2G05914 | -
 
Length: 1420  
Chromosome Location: Chr2: 2263124-2264543
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT2G05915;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT2G05915
TAIR Short Description: NULL
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Gene
AT2G19572 | locus:6530298180 | AT2G19572 | -
 
Length: 1572  
Chromosome Location: Chr2: 8470244-8471815
Organism . Short Name: A. thaliana
TAIR Computational Description: Natural antisense transcript overlaps with AT2G19570;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT2G19570
TAIR Short Description: NULL
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Gene
AT5G45472 | locus:6530298245 | AT5G45472 | -
 
Length: 9515  
Chromosome Location: Chr5: 18421549-18431063
Organism . Short Name: A. thaliana
TAIR Computational Description: None;(source:Araport11)
TAIR Curator Summary: Potential natural antisense gene, locus overlaps with AT5G45470
TAIR Short Description: NULL
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A quantitative balance between the activator CO and the repressor TEMPRANILLO genes determines Flowering locus T levels.
Organism: A. thaliana
Gene: CO
PubMed Id: 18718758
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Publication
15342526
First Author: Lall S
Title: Quantitative trait loci associated with adventitious shoot formation in tissue culture and the program of shoot development in Arabidopsis.
Year: 2004
Journal: Genetics
Volume: 167
Pages: 1883-92
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Publication
23234406
First Author: Zhuang Y
Title: Identification of functional genic components of major fusarium head blight resistance quantitative trait loci in wheat cultivar Sumai 3.
Year: 2013
Journal: Mol Plant Microbe Interact
Volume: 26
Pages: 442-50
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Publication
17205109
First Author: Li Y
Title: Genetics of local adaptation in the laboratory: flowering time quantitative trait loci under geographic and seasonal conditions in Arabidopsis.
Year: 2006
Journal: PLoS One
Volume: 1
Pages: e105
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Protein Domain
IPR044984
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Gene
AT1G10920 | locus:2197409 | LOV1 | LOCUS ORCHESTRATING VICTORIN EFFECTS1
Length: 3605  
Chromosome Location: Chr1: 3644180-3647784
Organism . Short Name: A. thaliana
TAIR Computational Description: NB-ARC domain-containing disease resistance protein;(source:Araport11)
TAIR Curator Summary: Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.
TAIR Short Description: NB-ARC domain-containing disease resistance protein
TAIR Aliases: LOV1
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Gene
AT3G04610 | locus:2084908 | FLK | flowering locus KH domain
Length: 4432  
Chromosome Location: Chr3: 1250553-1254984
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-binding KH domain-containing protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: RNA-binding KH domain-containing protein
TAIR Aliases: AtKH11, FLK
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Protein Domain
IPR016695
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Publication
17409091
First Author: Willems G
Title: The genetic basis of zinc tolerance in the metallophyte Arabidopsis halleri ssp. halleri (Brassicaceae): an analysis of quantitative trait loci.
Year: 2007
Journal: Genetics
Volume: 176
Pages: 659-74
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Gene
AT1G48510 | locus:2198030 | AT1G48510 | -
Length: 2201  
Chromosome Location: Chr1: 17934746-17936946
Organism . Short Name: A. thaliana
TAIR Computational Description: Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
TAIR Curator Summary: Encodes one of two Arabidopsis mitochondrial proteins similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly. Mutations result in defects in hypocotyl elongation and changes in GA homeostasis.
TAIR Short Description: Surfeit locus 1 cytochrome c oxidase biogenesis protein
TAIR Aliases: AtSURF1b, SURF1b
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Gene
AT3G17910 | locus:2088510 | SURF1 | SURFEIT 1
Length: 3022  
Chromosome Location: Chr3: 6133384-6136405
Organism . Short Name: A. thaliana
TAIR Computational Description: Surfeit locus 1 cytochrome c oxidase biogenesis protein;(source:Araport11)
TAIR Curator Summary: Encodes one of two Arabidopsis mitochondrial proteins similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly. Mutations result in embryo lethality.
TAIR Short Description: Surfeit locus 1 cytochrome c oxidase biogenesis protein
TAIR Aliases: AtSURF1a, EMB3121, SURF1, SURF1a
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Ontology Term Synonym
Ontology Term Synonym
Name: quantitative tagless co - purification
Type: synonym
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Gene
AT2G30140 | locus:2060832 | UGT87A2 | UDP-glucosyl transferase 87A2
Length: 1883  
Chromosome Location: Chr2: 12871984-12873866
Organism . Short Name: A. thaliana
TAIR Computational Description: UDP-Glycosyltransferase superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a putative glycosyltransferase. Regulates flowering time via FLOWERING LOCUS C.
TAIR Short Description: UDP-Glycosyltransferase superfamily protein
TAIR Aliases: UGT87A2
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Ontology Term Synonym
Ontology Term Synonym
Name: Ordered locus name
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: locus control element
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: locus control region
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: locus coeruleus development
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: locus caeruleus development
Type: synonym
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Gene
AT4G22300 | locus:2132085 | SOBER1 | SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1
Length: 2014  
Chromosome Location: Chr4: 11787299-11789312
Organism . Short Name: A. thaliana
TAIR Computational Description: carboxylesterase;(source:Araport11)
TAIR Curator Summary: Formerly known as SOBER1, this locus was split in the TAIR10 annotation into AT4G22300 and AT4G22305. This locus is now known as TIPSY1 and AT4G22305 corresponds to SOBER1.
TAIR Short Description: carboxylesterases
TAIR Aliases: TIPSY1
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Gene
AT1G11000 | locus:2197439 | MLO4 | MILDEW RESISTANCE LOCUS O 4
Length: 4378  
Chromosome Location: Chr1: 3671756-3676133
Organism . Short Name: A. thaliana
TAIR Computational Description: Seven transmembrane MLO family protein;(source:Araport11)
TAIR Curator Summary: A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
TAIR Short Description: Seven transmembrane MLO family protein
TAIR Aliases: ATMLO4, MLO4
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Gene
AT1G11310 | locus:2202064 | MLO2 | MILDEW RESISTANCE LOCUS O 2
Length: 3734  
Chromosome Location: Chr1: 3800500-3804233
Organism . Short Name: A. thaliana
TAIR Computational Description: Seven transmembrane MLO family protein;(source:Araport11)
TAIR Curator Summary: A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter. It is a novel virulence target of the P. syringae type III secreted effector HopZ2.
TAIR Short Description: Seven transmembrane MLO family protein
TAIR Aliases: ATMLO2, MLO2, PMR2
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Gene
AT1G26700 | locus:2200640 | MLO14 | MILDEW RESISTANCE LOCUS O 14
Length: 5060  
Chromosome Location: Chr1: 9227378-9232437
Organism . Short Name: A. thaliana
TAIR Computational Description: Seven transmembrane MLO family protein;(source:Araport11)
TAIR Curator Summary: A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
TAIR Short Description: Seven transmembrane MLO family protein
TAIR Aliases: ATMLO14, MLO14
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Gene
AT2G33670 | locus:2051073 | MLO5 | MILDEW RESISTANCE LOCUS O 5
Length: 3205  
Chromosome Location: Chr2: 14244951-14248155
Organism . Short Name: A. thaliana
TAIR Computational Description: Seven transmembrane MLO family protein;(source:Araport11)
TAIR Curator Summary: A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Acts redundantly with MLO9 to tether Ca2+ channels to the pollen tube plasma membrane to effect pollen tube guidance.
TAIR Short Description: Seven transmembrane MLO family protein
TAIR Aliases: ATMLO5, MLO5
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Gene
AT2G39200 | locus:2056113 | MLO12 | MILDEW RESISTANCE LOCUS O 12
Length: 3903  
Chromosome Location: Chr2: 16356041-16359943
Organism . Short Name: A. thaliana
TAIR Computational Description: Seven transmembrane MLO family protein;(source:Araport11)
TAIR Curator Summary: A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
TAIR Short Description: Seven transmembrane MLO family protein
TAIR Aliases: ATMLO12, MLO12
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