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Search results 1 to 100 out of 25851 for Principal component analysis

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Type Details Score
Interaction Term
MI:0810 | substitution analysis
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Ontology Term Synonym
Ontology Term Synonym
Name: substitut analysis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: FRET analysis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: random-spore analysis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: analysis feature
Type: synonym
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Gene
AT4G04680 | locus:2135074 | AT4G04680 | -
 
Length: 1141  
Chromosome Location: Chr4: 2372266-2373406
Organism . Short Name: A. thaliana
TAIR Computational Description: Rix1 complex component;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
ATCG00550 | locus:504954678 | PSBJ | photosystem II reaction center protein J
Length: 123  
Chromosome Location: ChrC: 63538-63660
Organism . Short Name: A. thaliana
TAIR Computational Description: photosystem II reaction center protein J;(source:Araport11)
TAIR Curator Summary: PSII component
TAIR Short Description: photosystem II reaction center protein J
TAIR Aliases: PSBJ
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Gene
AT5G12370 | locus:505006605 | SEC10 | exocyst complex component sec10
Length: 6063  
Chromosome Location: Chr5: 4002742-4008804
Organism . Short Name: A. thaliana
TAIR Computational Description: exocyst complex component sec10;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: exocyst complex component sec10
TAIR Aliases: SEC10
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Gene
AT1G21170 | locus:2199552 | SEC5B | -
Length: 6814  
Chromosome Location: Chr1: 7412830-7419643
Organism . Short Name: A. thaliana
TAIR Computational Description: Exocyst complex component SEC5;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Exocyst complex component SEC5
TAIR Aliases: SEC5B
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Gene
AT1G47550 | locus:2015418 | SEC3A | exocyst complex component sec3A
Length: 8209  
Chromosome Location: Chr1: 17456987-17465195
Organism . Short Name: A. thaliana
TAIR Computational Description: exocyst complex component sec3A;(source:Araport11)
TAIR Curator Summary: Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. It binds phosphoinositide lipids.
TAIR Short Description: exocyst complex component sec3A
TAIR Aliases: SEC3A
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Gene
AT1G47560 | locus:2015328 | SEC3B | exocyst complex component sec3B
Length: 6887  
Chromosome Location: Chr1: 17466535-17473421
Organism . Short Name: A. thaliana
TAIR Computational Description: exocyst complex component sec3B;(source:Araport11)
TAIR Curator Summary: Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
TAIR Short Description: exocyst complex component sec3B
TAIR Aliases: SEC3B
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Gene
AT1G61065 | locus:505006194 | AT1G61065 | -
 
Length: 1319  
Chromosome Location: Chr1: 22490221-22491539
Organism . Short Name: A. thaliana
TAIR Computational Description: 1,3-beta-glucan synthase component (DUF1218);(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Protein of unknown function (DUF1218)
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Gene
AT1G76850 | locus:2030056 | SEC5A | exocyst complex component sec5
Length: 6629  
Chromosome Location: Chr1: 28847871-28854499
Organism . Short Name: A. thaliana
TAIR Computational Description: exocyst complex component sec5;(source:Araport11)
TAIR Curator Summary: Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. The mRNA is cell-to-cell mobile.
TAIR Short Description: exocyst complex component sec5
TAIR Aliases: SEC5A
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Gene
AT3G56640 | locus:2102644 | SEC15A | exocyst complex component sec15A
Length: 3266  
Chromosome Location: Chr3: 20981316-20984581
Organism . Short Name: A. thaliana
TAIR Computational Description: exocyst complex component sec15A;(source:Araport11)
TAIR Curator Summary: Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
TAIR Short Description: exocyst complex component sec15A
TAIR Aliases: SEC15A
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Gene
AT1G80040 | locus:2016304 | AT1G80040 | -
 
Length: 2226  
Chromosome Location: Chr1: 30109059-30111284
Organism . Short Name: A. thaliana
TAIR Computational Description: ubiquitin system component Cue;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT4G02350 | locus:2133244 | SEC15B | exocyst complex component sec15B
Length: 2951  
Chromosome Location: Chr4: 1038114-1041064
Organism . Short Name: A. thaliana
TAIR Computational Description: exocyst complex component sec15B;(source:Araport11)
TAIR Curator Summary: Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. The mRNA is cell-to-cell mobile.
TAIR Short Description: exocyst complex component sec15B
TAIR Aliases: SEC15B
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Gene
AT5G49830 | locus:2155441 | EXO84B | exocyst complex component 84B
Length: 4671  
Chromosome Location: Chr5: 20250419-20255089
Organism . Short Name: A. thaliana
TAIR Computational Description: exocyst complex component 84B;(source:Araport11)
TAIR Curator Summary: Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
TAIR Short Description: exocyst complex component 84B
TAIR Aliases: EXO84B
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Ontology Term Synonym
Ontology Term Synonym
Name: contact point analysis
Type: synonym
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Gene
AT1G37010 | locus:2203068 | AT1G37010 | -
 
Length: 310  
Chromosome Location: Chr1: 14040918-14041227
Organism . Short Name: A. thaliana
TAIR Computational Description: spindle pole body component;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT3G28370 | locus:2088922 | AT3G28370 | -
 
Length: 4085  
Chromosome Location: Chr3: 10620534-10624618
Organism . Short Name: A. thaliana
TAIR Computational Description: spindle assembly checkpoint component;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT3G55410 | locus:2099981 | AT3G55410 | -
Length: 4785  
Chromosome Location: Chr3: 20541269-20546053
Organism . Short Name: A. thaliana
TAIR Computational Description: 2-oxoglutarate dehydrogenase, E1 component;(source:Araport11)
TAIR Curator Summary: Encodes the E1 subunit of the 2-oxoglutarate dehydrogenase.
TAIR Short Description: 2-oxoglutarate dehydrogenase, E1 component
TAIR Aliases: E1-OGDH1
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Gene
AT5G65750 | locus:2170000 | AT5G65750 | -
Length: 4565  
Chromosome Location: Chr5: 26303673-26308237
Organism . Short Name: A. thaliana
TAIR Computational Description: 2-oxoglutarate dehydrogenase, E1 component;(source:Araport11)
TAIR Curator Summary: Encodes the E1 subunit of the 2-oxoglutarate dehydrogenase.
TAIR Short Description: 2-oxoglutarate dehydrogenase, E1 component
TAIR Aliases: E1-OGDH2
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Gene
AT1G20580 | locus:2030442 | AT1G20580 | -
Length: 1933  
Chromosome Location: Chr1: 7128867-7130799
Organism . Short Name: A. thaliana
TAIR Computational Description: Small nuclear ribonucleoprotein family protein;(source:Araport11)
TAIR Curator Summary: Core component of spliceosomal snRNP.
TAIR Short Description: Small nuclear ribonucleoprotein family protein
TAIR Aliases: SMD3B
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Gene
AT3G07180 | locus:2098535 | AT3G07180 | -
 
Length: 3317  
Chromosome Location: Chr3: 2282233-2285549
Organism . Short Name: A. thaliana
TAIR Computational Description: GPI transamidase component PIG-S-like protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: GPI transamidase component PIG-S-related
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Gene
AT5G06680 | locus:2170164 | SPC98 | spindle pole body component 98
Length: 3332  
Chromosome Location: Chr5: 2056528-2059859
Organism . Short Name: A. thaliana
TAIR Computational Description: spindle pole body component 98;(source:Araport11)
TAIR Curator Summary: Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes. Enriched at the post-cytokinetic cell edges in leaves and roots. The mRNA is cell-to-cell mobile.
TAIR Short Description: spindle pole body component 98
TAIR Aliases: ATGCP3, ATSPC98, GCP3, SPC98
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Gene
AT5G14250 | locus:2145638 | COP13 | CONSTITUTIVE PHOTOMORPHOGENIC 13
Length: 2968  
Chromosome Location: Chr5: 4597868-4600835
Organism . Short Name: A. thaliana
TAIR Computational Description: Proteasome component (PCI) domain protein;(source:Araport11)
TAIR Curator Summary: Encodes subunit 3 of the COP9 signalosome.
TAIR Short Description: Proteasome component (PCI) domain protein
TAIR Aliases: COP13, CSN3, FUS11
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Gene
AT5G15610 | locus:2180917 | AT5G15610 | -
 
Length: 2831  
Chromosome Location: Chr5: 5079458-5082288
Organism . Short Name: A. thaliana
TAIR Computational Description: Proteasome component (PCI) domain protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Proteasome component (PCI) domain protein
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Gene
AT1G02090 | locus:2205593 | FUS5 | FUSCA 5
Length: 2532  
Chromosome Location: Chr1: 387277-389808
Organism . Short Name: A. thaliana
TAIR Computational Description: Proteasome component (PCI) domain protein;(source:Araport11)
TAIR Curator Summary: encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.
TAIR Short Description: Proteasome component (PCI) domain protein
TAIR Aliases: ATCSN7, COP15, CSN7, FUS5
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Gene
AT1G27752 | locus:4010713480 | AT1G27752 | -
 
Length: 5530  
Chromosome Location: Chr1: 9662021-9667550
Organism . Short Name: A. thaliana
TAIR Computational Description: Ubiquitin system component Cue protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Ubiquitin system component Cue protein
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Gene
AT3G02200 | locus:2076517 | AT3G02200 | -
 
Length: 2861  
Chromosome Location: Chr3: 406340-409200
Organism . Short Name: A. thaliana
TAIR Computational Description: Proteasome component (PCI) domain protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Proteasome component (PCI) domain protein
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Gene
AT4G19006 | locus:504955552 | AT4G19006 | -
 
Length: 2320  
Chromosome Location: Chr4: 10409148-10411467
Organism . Short Name: A. thaliana
TAIR Computational Description: Proteasome component (PCI) domain protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Proteasome component (PCI) domain protein
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Gene
AT1G58215 | - | AT1G58215 | -
   
Length: 3261  
Chromosome Location: Chr1: 21554927-21558187
Organism . Short Name: A. thaliana
TAIR Computational Description: spindle pole body component 110;(source:Araport11)
TAIR Short Description: NULL
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Gene
AT4G09680 | locus:2118445 | CTC1 | conserved telomere maintenance component 1
Length: 6606  
Chromosome Location: Chr4: 6116699-6123304
Organism . Short Name: A. thaliana
TAIR Computational Description: conserved telomere maintenance component 1;(source:Araport11)
TAIR Curator Summary: Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance.
TAIR Short Description: conserved telomere maintenance component 1
TAIR Aliases: ATCTC1, CTC1
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Gene
AT5G32440 | locus:2145801 | AT5G32440 | -
 
Length: 1887  
Chromosome Location: Chr5: 12076717-12078603
Organism . Short Name: A. thaliana
TAIR Computational Description: Ubiquitin system component Cue protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Ubiquitin system component Cue protein
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Gene
AT5G42970 | locus:2159961 | COP8 | CONSTITUTIVE PHOTOMORPHOGENIC 8
Length: 3664  
Chromosome Location: Chr5: 17237153-17240816
Organism . Short Name: A. thaliana
TAIR Computational Description: Proteasome component (PCI) domain protein;(source:Araport11)
TAIR Curator Summary: encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.
TAIR Short Description: Proteasome component (PCI) domain protein
TAIR Aliases: ATS4, COP14, COP8, CSN4, EMB134, FUS4, FUS8
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Gene
AT5G45620 | locus:2171998 | AT5G45620 | -
 
Length: 2659  
Chromosome Location: Chr5: 18501486-18504144
Organism . Short Name: A. thaliana
TAIR Computational Description: Proteasome component (PCI) domain protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Proteasome component (PCI) domain protein
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Gene
AT5G58030 | locus:2147770 | AT5G58030 | -
Length: 1844  
Chromosome Location: Chr5: 23486777-23488620
Organism . Short Name: A. thaliana
TAIR Computational Description: Transport protein particle (TRAPP) component;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Transport protein particle (TRAPP) component
TAIR Aliases: TRAPPC5
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Gene
AT2G48060 | locus:2066367 | AT2G48060 | -
Length: 11616  
Chromosome Location: Chr2: 19651108-19662723
Organism . Short Name: A. thaliana
TAIR Computational Description: piezo-type mechanosensitive ion channel component;(source:Araport11)
TAIR Curator Summary: Similar to mechanically sensitive ion channel identified in mouse. Mutants display root helical growth phenotype in agar media suggesting a role in mechanoperception at the root cap.
TAIR Short Description: NULL
TAIR Aliases: PZO1
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Gene
AT3G05000 | locus:2114850 | AT3G05000 | -
Length: 1657  
Chromosome Location: Chr3: 1387175-1388831
Organism . Short Name: A. thaliana
TAIR Computational Description: Transport protein particle (TRAPP) component;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Transport protein particle (TRAPP) component
TAIR Aliases: TRAPPC6, TRS33
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Gene
AT5G54750 | locus:2160115 | AT5G54750 | -
Length: 2244  
Chromosome Location: Chr5: 22241478-22243721
Organism . Short Name: A. thaliana
TAIR Computational Description: Transport protein particle (TRAPP) component;(source:Araport11)
TAIR Curator Summary: Part of multi-protein complex, acting as guanine nucleotide exchange factors (GEFs) and possibly as tethers, regulating intracellular trafficking.
TAIR Short Description: Transport protein particle (TRAPP) component
TAIR Aliases: TRAPPC3
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Gene
AT5G66090 | locus:2156892 | AT5G66090 | -
 
Length: 1493  
Chromosome Location: Chr5: 26425680-26427172
Organism . Short Name: A. thaliana
TAIR Computational Description: cell wall integrity/stress response component;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT4G14540 | locus:2129885 | NF-YB3 | nuclear factor Y, subunit B3
Length: 976  
Chromosome Location: Chr4: 8344349-8345324
Organism . Short Name: A. thaliana
TAIR Computational Description: nuclear factor Y, subunit B3;(source:Araport11)
TAIR Curator Summary: Component of Nuclear factor Y transcription factor.
TAIR Short Description: nuclear factor Y, subunit B3
TAIR Aliases: NF-YB3
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Gene
AT5G60010 | locus:2168113 | AT5G60010 | -
Length: 4783  
Chromosome Location: Chr5: 24160270-24165052
Organism . Short Name: A. thaliana
TAIR Computational Description: ferric reductase-like transmembrane component family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: ferric reductase-like transmembrane component family protein
TAIR Aliases: RbohH
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Gene
AT1G01360 | locus:2035227 | RCAR1 | regulatory component of ABA receptor 1
Length: 1392  
Chromosome Location: Chr1: 141870-143261
Organism . Short Name: A. thaliana
TAIR Computational Description: regulatory component of ABA receptor 1;(source:Araport11)
TAIR Curator Summary: Encodes RCAR1 (regulatory components of ABA receptor). Interacts with and regulates the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2. Functions as abscisic acid sensor. The mRNA is cell-to-cell mobile.
TAIR Short Description: regulatory component of ABA receptor 1
TAIR Aliases: PYL9, RCAR1
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Gene
AT2G41620 | locus:2062693 | AT2G41620 | -
 
Length: 7800  
Chromosome Location: Chr2: 17347304-17355103
Organism . Short Name: A. thaliana
TAIR Computational Description: Nucleoporin interacting component (Nup93/Nic96-like) family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Nucleoporin interacting component (Nup93/Nic96-like) family protein
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Gene
AT2G47450 | locus:2062046 | CAO | CHAOS
Length: 1815  
Chromosome Location: Chr2: 19472573-19474387
Organism . Short Name: A. thaliana
TAIR Computational Description: chloroplast signal recognition particle component (CAO);(source:Araport11)
TAIR Curator Summary: A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1. The mRNA is cell-to-cell mobile.
TAIR Short Description: chloroplast signal recognition particle component (CAO)
TAIR Aliases: CAO, CPSRP43
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Gene
AT3G45810 | locus:2077192 | AT3G45810 | -
Length: 5067  
Chromosome Location: Chr3: 16832726-16837792
Organism . Short Name: A. thaliana
TAIR Computational Description: ferric reductase-like transmembrane component family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: ferric reductase-like transmembrane component family protein
TAIR Aliases: RbohJ
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Gene
AT3G57350 | locus:2082548 | AT3G57350 | -
 
Length: 5038  
Chromosome Location: Chr3: 21220387-21225424
Organism . Short Name: A. thaliana
TAIR Computational Description: Nucleoporin interacting component (Nup93/Nic96-like) family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Nucleoporin interacting component (Nup93/Nic96-like) family protein
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Gene
AT3G03600 | locus:2096394 | RPS2 | ribosomal protein S2
Length: 1159  
Chromosome Location: Chr3: 867548-868706
Organism . Short Name: A. thaliana
TAIR Computational Description: ribosomal protein S2;(source:Araport11)
TAIR Curator Summary: Structural component of the mitochondrial ribosome small subunit
TAIR Short Description: ribosomal protein S2
TAIR Aliases: RPS2
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Gene
AT3G16620 | locus:2089348 | TOC120 | translocon outer complex protein 120
Length: 3750  
Chromosome Location: Chr3: 5658317-5662066
Organism . Short Name: A. thaliana
TAIR Computational Description: translocon outer complex protein 120;(source:Araport11)
TAIR Curator Summary: component of TOC complex, plastid protein import machinery.
TAIR Short Description: translocon outer complex protein 120
TAIR Aliases: ATTOC120, TOC120
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Gene
AT3G17900 | locus:2088495 | AT3G17900 | -
Length: 4881  
Chromosome Location: Chr3: 6128506-6133386
Organism . Short Name: A. thaliana
TAIR Computational Description: unknown protein;(source:TAIR10)
TAIR Curator Summary: Plant specific component of TRAPPII vesicle transport complex.
TAIR Short Description: NULL
TAIR Aliases: TRIPP
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Publication
16477366
First Author: Osato Y
Title: A principal role for AtXTH18 in Arabidopsis thaliana root growth: a functional analysis using RNAi plants.
Year: 2006
Journal: J Plant Res
Volume: 119
Pages: 153-62
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Interaction Term
MI:0354 | cellular component
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Gene
AT5G58575 | locus:505006700 | AT5G58575 | -
Length: 2111  
Chromosome Location: Chr5: 23673533-23675643
Organism . Short Name: A. thaliana
TAIR Computational Description: SAGA-associated factor-like protein;(source:Araport11)
TAIR Curator Summary: Component of the deubiquitination module of the SAGA complex.
TAIR Short Description: NULL
TAIR Aliases: SGF11
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Gene
AT4G36080 | locus:504955359 | AT4G36080 | -
Length: 18261  
Chromosome Location: Chr4: 17059779-17078039
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphotransferases/inositol or phosphatidylinositol kinase;(source:Araport11)
TAIR Curator Summary: Component of the SPT module of the SAGA complex.
TAIR Short Description: phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases
TAIR Aliases: TRA1b
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Gene
AT1G55900 | locus:2012010 | TIM50 | -
Length: 2801  
Chromosome Location: Chr1: 20903053-20905853
Organism . Short Name: A. thaliana
TAIR Computational Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein;(source:Araport11)
TAIR Curator Summary: component of a translocase in the mitochondrial inner membrane
TAIR Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
TAIR Aliases: EMB1860, TIM50
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Gene
AT3G56900 | locus:2103620 | AT3G56900 | -
Length: 3362  
Chromosome Location: Chr3: 21066122-21069483
Organism . Short Name: A. thaliana
TAIR Computational Description: Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes ALADIN, a component of the nuclear pore complex.
TAIR Short Description: Transducin/WD40 repeat-like superfamily protein
TAIR Aliases: ALADIN
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Gene
AT2G17930 | locus:2060933 | AT2G17930 | -
Length: 18317  
Chromosome Location: Chr2: 7784288-7802604
Organism . Short Name: A. thaliana
TAIR Computational Description: Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein;(source:Araport11)
TAIR Curator Summary: Component of the SPT module of the SAGA complex.
TAIR Short Description: Phosphatidylinositol 3- and 4-kinase family protein with FAT domain
TAIR Aliases: TRA1a
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Ontology Term Synonym
Ontology Term Synonym
Name: component
Type: synonym
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Gene
AT1G51130 | locus:2026047 | AT1G51130 | -
Length: 2526  
Chromosome Location: Chr1: 18939194-18941719
Organism . Short Name: A. thaliana
TAIR Computational Description: Nse4, component of Smc5/6 DNA repair complex;(source:Araport11)
TAIR Curator Summary: δ-kleisin component of the SMC5/6 complex, possibly involved in synaptonemal complex formation.
TAIR Short Description: Nse4, component of Smc5/6 DNA repair complex
TAIR Aliases: Nse4A
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Gene
AT3G20760 | locus:2091896 | AT3G20760 | -
Length: 3199  
Chromosome Location: Chr3: 7256656-7259854
Organism . Short Name: A. thaliana
TAIR Computational Description: Nse4, component of Smc5/6 DNA repair complex;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: Nse4, component of Smc5/6 DNA repair complex
TAIR Aliases: Nse4B
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Gene
AT3G07140 | locus:2098485 | AT3G07140 | -
 
Length: 2961  
Chromosome Location: Chr3: 2261104-2264064
Organism . Short Name: A. thaliana
TAIR Computational Description: GPI transamidase component Gpi16 subunit family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: GPI transamidase component Gpi16 subunit family protein
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Gene
AT4G33890 | locus:2118944 | AT4G33890 | -
Length: 1770  
Chromosome Location: Chr4: 16249614-16251383
Organism . Short Name: A. thaliana
TAIR Computational Description: transcriptional regulator of RNA polII, SAGA, subunit;(source:Araport11)
TAIR Curator Summary: Component of SAGA complex, SPT module subunit, interacts with HAG1.
TAIR Short Description: NULL
TAIR Aliases: ADA1B
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Gene
AT1G74970 | locus:2037222 | RPS9 | ribosomal protein S9
Length: 1932  
Chromosome Location: Chr1: 28157386-28159317
Organism . Short Name: A. thaliana
TAIR Computational Description: ribosomal protein S9;(source:Araport11)
TAIR Curator Summary: Ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
TAIR Short Description: ribosomal protein S9
TAIR Aliases: PRPS9, RPS9, SOT8, TWN3
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Gene
AT1G15110 | locus:2037788 | PSS1 | phosphatidylserine synthase 1
Length: 3376  
Chromosome Location: Chr1: 5198940-5202315
Organism . Short Name: A. thaliana
TAIR Computational Description: phosphatidyl serine synthase family protein;(source:Araport11)
TAIR Curator Summary: PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.
TAIR Short Description: phosphatidyl serine synthase family protein
TAIR Aliases: AtPSS1, PSS1
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GO Term
GO:0097228 | sperm principal piece
Description: The segment of the sperm flagellum where the mitochondrial sheath ends, and the outer dense fibers (ODFs) associated with outer axonemal doublets 3 and 8 are replaced by the 2 longitudinal columns of the fibrous sheath (FS) which run the length of the principal piece and are stabilized by circumferential ribs. The principal piece makes up ~2/3 of the length of the sperm flagellum and is defined by the presence of the FS and of only 7 (rather than 9) ODFs which taper and then terminate near the distal end of the principal piece.
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Interaction Term
MI:0055 | fluorescent resonance energy transfer
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Ontology Term Synonym
Ontology Term Synonym
Name: cross-linking and analysis of cDNAs
Type: synonym
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Gene
AT1G19580 | locus:2013104 | GAMMA CA1 | gamma carbonic anhydrase 1
Length: 2886  
Chromosome Location: Chr1: 6774683-6777568
Organism . Short Name: A. thaliana
TAIR Computational Description: gamma carbonic anhydrase 1;(source:Araport11)
TAIR Curator Summary: Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
TAIR Short Description: gamma carbonic anhydrase 1
TAIR Aliases: GAMMA CA1
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Gene
AT1G45474 | locus:2825741 | Lhca5 | photosystem I light harvesting complex gene 5
Length: 1557  
Chromosome Location: Chr1: 17179250-17180806
Organism . Short Name: A. thaliana
TAIR Computational Description: photosystem I light harvesting complex protein 5;(source:Araport11)
TAIR Curator Summary: Encodes a component of the light harvesting complex of photosystem I.
TAIR Short Description: photosystem I light harvesting complex gene 5
TAIR Aliases: Lhca5
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Gene
AT1G47260 | locus:2036741 | GAMMA CA2 | gamma carbonic anhydrase 2
Length: 3934  
Chromosome Location: Chr1: 17319551-17323484
Organism . Short Name: A. thaliana
TAIR Computational Description: gamma carbonic anhydrase 2;(source:Araport11)
TAIR Curator Summary: Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
TAIR Short Description: gamma carbonic anhydrase 2
TAIR Aliases: APFI, GAMMA CA2
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Gene
AT5G66510 | locus:2154840 | GAMMA CA3 | gamma carbonic anhydrase 3
Length: 1939  
Chromosome Location: Chr5: 26549698-26551636
Organism . Short Name: A. thaliana
TAIR Computational Description: gamma carbonic anhydrase 3;(source:Araport11)
TAIR Curator Summary: Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
TAIR Short Description: gamma carbonic anhydrase 3
TAIR Aliases: GAMMA CA3
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Principal role for the AtXTH18 gene is primary root elongation [AtXTH18]
Organism: A. thaliana
Gene: XTH18
PubMed Id: 16477366
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Gene
AT4G19350 | locus:2140361 | EMB3006 | embryo defective 3006
Length: 1808  
Chromosome Location: Chr4: 10561950-10563757
Organism . Short Name: A. thaliana
TAIR Computational Description: embryo defective 3006;(source:Araport11)
TAIR Curator Summary: Component of MIS12 complex involved in recruitment of proteins to kinetochore.Embryo lethal.
TAIR Short Description: embryo defective 3006
TAIR Aliases: EMB3006, NNF1
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Gene
AT3G27080 | locus:2092045 | TOM20-3 | translocase of outer membrane 20 kDa subunit 3
Length: 1792  
Chromosome Location: Chr3: 9984947-9986738
Organism . Short Name: A. thaliana
TAIR Computational Description: translocase of outer membrane 20 kDa subunit 3;(source:Araport11)
TAIR Curator Summary: Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins
TAIR Short Description: translocase of outer membrane 20 kDa subunit 3
TAIR Aliases: TOM20-3
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Gene
AT3G49660 | locus:2097435 | WDR5a | human WDR5 (WD40 repeat) homolog a
Length: 2150  
Chromosome Location: Chr3: 18413564-18415713
Organism . Short Name: A. thaliana
TAIR Computational Description: Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex.
TAIR Short Description: Transducin/WD40 repeat-like superfamily protein
TAIR Aliases: AtWDR5a, WDR5a
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Gene
AT3G54890 | locus:2082717 | LHCA1 | photosystem I light harvesting complex gene 1
Length: 1673  
Chromosome Location: Chr3: 20339504-20341176
Organism . Short Name: A. thaliana
TAIR Computational Description: chlorophyll a-b binding protein 6;(source:Araport11)
TAIR Curator Summary: Encodes a component of the light harvesting complex associated with photosystem I.
TAIR Short Description: photosystem I light harvesting complex gene 1
TAIR Aliases: LHCA1
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Gene
AT4G00695 | locus:504955465 | AT4G00695 | -
 
Length: 2384  
Chromosome Location: Chr4: 283592-285975
Organism . Short Name: A. thaliana
TAIR Computational Description: Spc97/Spc98 family of spindle pole body (SBP) component;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: NULL
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Gene
AT5G14100 | locus:2174653 | ABCI11 | ATP-binding cassette I11
Length: 2406  
Chromosome Location: Chr5: 4549438-4551843
Organism . Short Name: A. thaliana
TAIR Computational Description: non-intrinsic ABC protein 14;(source:Araport11)
TAIR Curator Summary: Member of NAP subfamily. Putative component of chloroplast ECF/ABC-Transporter involved in metal homeostasis.
TAIR Short Description: non-intrinsic ABC protein 14
TAIR Aliases: ABCI11, ATNAP14, NAP14
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Gene
AT4G32285 | locus:505006543 | AT4G32285 | -
Length: 2647  
Chromosome Location: Chr4: 15585443-15588089
Organism . Short Name: A. thaliana
TAIR Computational Description: ENTH/ANTH/VHS superfamily protein;(source:Araport11)
TAIR Curator Summary: Putative clathrin assembly protein, component of TPLATE complex that functions in clathrin-mediated endocytosis.
TAIR Short Description: ENTH/ANTH/VHS superfamily protein
TAIR Aliases: CAP1, PICALM4b
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Gene
AT4G33460 | locus:2119186 | ABCI10 | ATP-binding cassette I10
Length: 2371  
Chromosome Location: Chr4: 16098070-16100440
Organism . Short Name: A. thaliana
TAIR Computational Description: ABC transporter family protein;(source:Araport11)
TAIR Curator Summary: Member of NAP subfamily. Putative component of chloroplast ECF/ABC-Transporter involved in metal homeostasis.
TAIR Short Description: ABC transporter family protein
TAIR Aliases: ABCI10, ATNAP13, EMB2751
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Gene
AT3G19130 | locus:2094098 | RBP47B | RNA-binding protein 47B
Length: 2926  
Chromosome Location: Chr3: 6611182-6614107
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-binding protein 47B;(source:Araport11)
TAIR Curator Summary: RBP47B, is a component of the stress granule proteome and interacts with 2',3'-cAMP.
TAIR Short Description: RNA-binding protein 47B
TAIR Aliases: ATRBP47B, RBP47B
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Gene
AT3G45770 | locus:2102664 | AT3G45770 | -
 
Length: 2478  
Chromosome Location: Chr3: 16805473-16807950
Organism . Short Name: A. thaliana
TAIR Computational Description: Polyketide synthase, enoylreductase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a mitochondrial enoyl-ACP reductase, a component of the fatty acid synthase complex.
TAIR Short Description: Polyketide synthase, enoylreductase family protein
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Gene
AT5G63510 | locus:2167346 | GAMMA CAL1 | gamma carbonic anhydrase like 1
Length: 1905  
Chromosome Location: Chr5: 25423967-25425871
Organism . Short Name: A. thaliana
TAIR Computational Description: gamma carbonic anhydrase like 1;(source:Araport11)
TAIR Curator Summary: Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
TAIR Short Description: gamma carbonic anhydrase like 1
TAIR Aliases: GAMMA CAL1
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SO Term
SO:0000848 | LTR_component
Description: The long terminal repeat found at the ends of the sequence to be inserted into the host genome.
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Gene
AT3G57170 | locus:2080655 | AT3G57170 | -
 
Length: 3950  
Chromosome Location: Chr3: 21159373-21163322
Organism . Short Name: A. thaliana
TAIR Computational Description: N-acetylglucosaminyl transferase component family protein / Gpi1 family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: N-acetylglucosaminyl transferase component family protein / Gpi1 family protein
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Gene
AT5G19130 | locus:2182197 | AT5G19130 | -
 
Length: 3193  
Chromosome Location: Chr5: 6415920-6419112
Organism . Short Name: A. thaliana
TAIR Computational Description: GPI transamidase component family protein / Gaa1-like family protein;(source:Araport11)
TAIR Curator Summary: NULL
TAIR Short Description: GPI transamidase component family protein / Gaa1-like family protein
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Gene
AT1G29920 | locus:2019372 | CAB2 | chlorophyll A/B-binding protein 2
Length: 1314  
Chromosome Location: Chr1: 10474656-10475969
Organism . Short Name: A. thaliana
TAIR Computational Description: chlorophyll A/B-binding protein 2;(source:Araport11)
TAIR Curator Summary: Encodes lhcb1.1 a component of the LHCIIb light harvesting complex associated with photosystem II.
TAIR Short Description: chlorophyll A/B-binding protein 2
TAIR Aliases: AB165, CAB2, LHCB1.1
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Gene
AT3G02680 | locus:2076934 | NBS1 | nijmegen breakage syndrome 1
Length: 3255  
Chromosome Location: Chr3: 576308-579562
Organism . Short Name: A. thaliana
TAIR Computational Description: nijmegen breakage syndrome 1;(source:Araport11)
TAIR Curator Summary: DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and MRE11
TAIR Short Description: nijmegen breakage syndrome 1
TAIR Aliases: ATNBS1, NBS1
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Gene
AT3G48090 | locus:2097855 | EDS1 | enhanced disease susceptibility 1
Length: 2819  
Chromosome Location: Chr3: 17755329-17758147
Organism . Short Name: A. thaliana
TAIR Computational Description: alpha/beta-Hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.
TAIR Short Description: alpha/beta-Hydrolases superfamily protein
TAIR Aliases: ATEDS1, EDS1
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Gene
AT5G19350 | locus:2150215 | AT5G19350 | -
Length: 2707  
Chromosome Location: Chr5: 6518777-6521483
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
TAIR Curator Summary: RBP45d is a component of the U1 small nuclear ribonucleoprotein and regulates alternative splicing.
TAIR Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
TAIR Aliases: RBP45d
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Gene
AT5G54260 | locus:2162615 | MRE11 | MEIOTIC RECOMBINATION 11
Length: 6015  
Chromosome Location: Chr5: 22032038-22038052
Organism . Short Name: A. thaliana
TAIR Computational Description: DNA repair and meiosis protein (Mre11);(source:Araport11)
TAIR Curator Summary: DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1
TAIR Short Description: DNA repair and meiosis protein (Mre11)
TAIR Aliases: ATMRE11, MRE11
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Interaction Term
MI:0439 | random spore analysis
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SO Term
SO:0001410 | experimental_feature
Description: A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer.
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Protein
A0A1P8B3E5_ARATH | A0A1P8B3E5
Organism . Name: Arabidopsis thaliana
Length: 224  
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Protein
A0A5S9XN45_ARATH | A0A5S9XN45
Organism . Name: Arabidopsis thaliana
Length: 790  
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Protein
A0A5S9XP70_ARATH | A0A5S9XP70
Organism . Name: Arabidopsis thaliana
Length: 804  
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Protein
A0A5S9XQQ3_ARATH | A0A5S9XQQ3
Organism . Name: Arabidopsis thaliana
Length: 261  
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Protein
A0A1P8AUV6_ARATH | A0A1P8AUV6
Organism . Name: Arabidopsis thaliana
Length: 985  
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Protein
A0A178UFG2_ARATH | A0A178UFG2
Organism . Name: Arabidopsis thaliana
Length: 838  
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