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Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and protein reports with orthology, expression, interactions and the latest annotation, plus analysis tools, community apps, and web services. Araport is 100% free and open-source. Registered members can save their analysis, publish science apps, and post announcements. READ MORE 


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Requests for Comment

Requests for comment (RFC) are an informal process for us to request outside input concerning policies and guidelines on how the Arabidopsis thaliana genome, annotation, and enabling data infrastructure are managed.

RFC001: Arabidopsis Data API controlled vocabulary draft specification

The Araport team has developed a lightweight controlled vocabulary for use in newly-created web service APIs. The objective is to minimize confusion among services when users are making related queries. We wish for the community to examine the initial draft before we commence work on using the specification in development of production web services.

The current draft can be found at the Araport GitHub.

Comments are open until May 30, 2015.

Title Submitter Publication Description
ABC model of floral organ type George Haughn ABC model of floral organ type
an Arabidopsis-specific orphan gene that functions in regulating carbon allocation Ling Li My research discovered an Arabidopsis-specific orphan gene that functions in regulating carbon allocation-- the first research to discover a function of an orphan gene in plant metabolism. The gene name is Qua Quine Starch.
an Arabidopsis-specific orphan gene that functions in regulating carbon allocation Ling Li My research discovered an Arabidopsis-specific orphan gene that functions in regulating carbon allocation-- the first research to discover a function of an orphan gene in plant metabolism. The gene name is Qua Quine Starch.
An LL-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants. Tom Leustek An LL-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants.
boron transporter Toru Fujiwara More than ten years ago, we published first identification of boron transporter in living systems.