Science Apps Catalog

This is the current set of public apps deployed at Araport. Once you are logged in, you can preview their functions one-by-one by clicking each icon, or you can install and configure them permanently into your own private workspace.


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You can filter apps by name, description, tags, and author. Filter with free text or target specific fields, for example, with author:araport or tags:blast.

asher/
50 Years of Arabidopsis Research
v0.0.16
BAR, Arabidopsis, Research, Publications
asher/
Araport ePlant
v0.1.21
Arabidopsis, ePlant, BAR
mrhanlon/
Araport File Browser
v0.2.3
eriksf/
AT Expression Profiling
v1.0.5
arabidopsis, expression, qPCR, GFP, reporter
ibelyaev/
Atted Science Application
v2.1.6
arabidopsis, gene, expression, co-expression
mrhanlon/
BAR Expression Viewer
v1.1.0
arabidopsis, expression, fluorescence
asher/
BAR Gene Slider
v0.0.32
BAR, Arabidopsis, Gene Slider

The TAIR10 Col-0 Arabidopsis thaliana sequence is decorated with JASPAR transcription factor binding site annotations plus sequence logos summarizing alignments of conserved non-coding Brassicaceae sequences.

asher/
BAR Interactions Viewer
v0.1.11
BAR, Arabidopsis, interactions, proteins
eriksf/
D3 Matrix Demo App
v0.2
arabidopsis, expression, coexpression
eriksf/
EBI IntAct Viewer
v1.0.7
EBI, arabidopsis, interactions
asher/
eFP-Seq Browser
v0.0.5
eFP-Seq, BAR
eriksf/
Gene App
v2.6.4
arabidopsis, gene, ThaleMine, InterMine

An app to display gene information from ThaleMine APIs.

eriksf/
HRGRN App
v0.0.7
arabidopsis, metabolism, signal transduction, gene regulatory network
ionomics_hub/
ionomicshub-app
latest

The iHUB helps us in improving our understanding of how plants take up, transport and store their nutrient and toxic elements.

brianliu/
KEGG Pathway App
v1.5
arabidopsis, pathway, KEGG
eriksf/
phasiRNA loci
latest
iliban/
PhosPhAt App
v1.5.1
arabidopsis, protein, PhosPhAt, phosphorylation
eriksf/
Plant Ontology Lookup
v0.1.0
eriksf/
PMR Plotter
v0.8.3
arabidopsis, PMR, metabolomics, gene

Metabolomics of knock-outs from the PMR database.

eriksf/
Protein App
v2.0.9
arabidopsis, protein, ThaleMine, InterMine
mrhanlon/
Scientist's Notebook
v0.1.3
eriksf/
Sequence Viewer App
2.8.4
arabidopsis, gene, features, ThaleMine, sequence
eriksf/
Tree Viewer App
v2.0.9
arabidopsis, gene, newick, tree, Ensembl Genomes

Have an idea for a cool app? Let us know! Want to share your own Science Apps with the Araport community? Get started at the Developer Zone.