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You can filter APIs by namespace, service, description, tags, etc. Filter with free text or target specific fields, for example, with namespace:aip or tags:expression.

Namespaces with "-dev" or "-test" are considered "development" APIs and are hidden by default. These are APIs that may be changing rapidly and may not be stable enought for production.

aip/
add_to_thalemine_list
1.2

arabidopsis, thalemine, list,  

Add identifiers to a users ThaleMine list

coge/
api
0.1

coge, comparative genomics, epic-coge, jbrowse,  

Passthrough adapter for CoGe Web Services RESTful API

araport/
araport11_gene_structure_by_locus
1.1

annotation, arabidopsis, araport11,  

Given a valid AGI locus return it's features from the latest Araport11 annotation

araport/
araport11_genomic_region_to_jbrowse
0.1

annotation, arabidopsis, araport11,  

Web service to extract features within a region from latest Araport11 data in ThaleMine and return in JBrowse compatible JSON format

araport/
araport11_gff_region_to_jbrowse
0.1

annotation, arabidopsis, araport11,  

Web service to extract features within a region from latest Araport11 GFF and return data in JBrowse compatible JSON format

at_srna/
at_srna
0.1

 

Arabidopsis thalaiana small RNA abundance per line

ionomicshub/
atg_number_search
0.1

 

iHUB Collaborative International Network for Ionomics. Improving our understanding of how plants take up, transport and store their nutrient and toxic elements, collectively known as the ionome, will benefit human health and the natural environment. Here you will find curated ionomic data on many thousands of plant samples freely available to the public.

atted/
atted_coex
1.1

coexpression, expression,  

Passthrough adapter for ATTED-II API (version 1)

atted/
atted_coexpressed_by_locus
2.1

coexpression, expression,  

Given a valid AGI locus, fetch coexpressed genes from the ATTED-II database (version 2)

cbmso/
chromatin_states_to_jbrowse
0.2

chromatin, motif, epigenetics, ChIP-Seq,  

Landscape of Arabidopsis thaliana chromatin states using 16 features, including DNA sequence, CG methylation, histone variants, and modifications

aip/
create_thalemine_list
1.2

arabidopsis, thalemine, list,  

Create a list of specified type in ThaleMine for the current user

araport/
curated_comments_by_protein_identifier
0.2

arabidopsis, protein, ThaleMine, InterMine,  

Given an identifier return curated comments about a protein from ThaleMine.

ebi/
ebi_intact_by_locus
0.3

arabidopsis, interactions,  

Given a valid AGI locus return it's molecular interactions from EBI's IntAct database

ebi/
ebi_intact_cytoscape_by_locus
0.4

arabidopsis, interactions,  

Given a valid AGI locus return it's molecular interactions in cytoscape.js format from EBI's IntAct database

asher-live/
efp-seq_browser_aws
0.2

eFP-Seq Browser, Arabidopsis, Expression, BAR,  

A web service to get Araport data from Amazon S3 for eFP-Seq Browser

asher-live/
efp-seq_browser_gene_structure
0.2

eFP-Seq Browser, Arabidopsis, Expression, BAR,  

A web service to get gene structure data from the BAR

aip/
efp_by_locus
0.2.0

expression, arabidopsis, fluorescence,  

BAR service to return an eFP image for an AGI locus identifier

asher-live/
eplant_navigator_service
0.1

ePlant, Navigator, Arabidopsis, Expression, BAR,  

A pass-through adapter for BAR navigator web service.

asher-live/
eplant_service
0.5

ePlant, Arabidopsis, Expression, BAR,  

Multi-point pass-through adaptor for BAR ePlant web services.

asher-live/
eplant_service
0.6

ePlant, Arabidopsis, Expression, BAR,  

Multi-point pass-through adaptor for BAR ePlant web services.

phosphat/
experimental_hotspots
0.1

PhosPhAt, protein, phosphorylation, hotspots,  

Phosphorylation hotspots (experimental) from PhosPhAt.

asher-live/
expression_angler_service
0.3

Expression Angler, Arabidopsis, Expression, BAR,  

Multi-point pass-through adaptor for BAR Expression Angler web services.

asher-live/
expression_angler_service
0.4

Expression Angler, Arabidopsis, Expression, BAR,  

Multi-point pass-through adaptor for BAR Expression Angler web services.

jcvi/
expression_condition_comparison
0.3

expression, arabidopsis, qPCR,  

Given two tissues/treatments return expression comparison data from 2010 Arabidopsis qPCR data

jcvi/
expression_per_gene_tissue
0.3

expression, arabidopsis, qPCR,  

Given a valid AGI locus and/or a tissue/treatment return expression data from 2010 Arabidopsis qPCR data

aip/
expressologs_by_locus
0.2.0

expression, arabidopsis, comparative genomics,  

Given a valid AGI locus, return homologous genes that exhibit similar expression patterns in equivalent tissues in other plant species

aip/
find_in_thalemine_list
1.2

arabidopsis, thalemine, list,  

Find object of specified type in a users ThaleMine lists

florid/
florid_adapter
1.1

flowering, interactions,  

Adapter between FLOR-ID and Araport

araport/
gene_by_geneid
1.1

gene, thalemine, intermine, iniyan,  

Araport API that serves chromosome information about genes.

araport/
gene_features_by_locus
0.2

arabidopsis, gene, ThaleMine, InterMine,  

Given an AGI locus identifier return the overlapping features of a gene from ThaleMine.

araport/
gene_history_by_locus
0.1

arabidopsis, gene, ThaleMine, InterMine,  

Given an AGI locus identifier return history information about a gene from ThaleMine.

araport/
gene_ontology_by_locus
0.2

arabidopsis, gene, gene ontology, ThaleMine, InterMine,  

Given an AGI locus identifier return Gene ontology information from ThaleMine.

araport/
gene_summary_by_locus
0.2

arabidopsis, gene, ThaleMine, InterMine,  

Given an AGI locus identifier return summary information about a gene from ThaleMine.

mapman/
genelookupflat
0.1

 

asher/
generic_mapman_bin_by_locus
0.1

 

Returns MapMan bin information for a given AGI locus identifier using the generic type of Araport web service

araport/
generifs_by_locus
0.1

arabidopsis, gene, GeneRIF, ThaleMine, InterMine,  

Given an AGI locus identifier return GeneRIF information from ThaleMine.

kegg/
genes_by_kegg_pathway
0.3

KEGG, pathway, genes,  

Get the genes in a KEGG pathway

asher-live/
geneslider
0.0.1

BAR, Arabidopsis, Gene Slider,  

Returns data for Araport Gene Slider

aip/
get_identifiers_by_coordinate
0.2

arabidopsis, gene, features, ThaleMine,  

Retrieve AGI identifiers provided a coordinate location on the A.thaliana genome from ThaleMine.

aip/
get_protein_sequence_by_identifier
0.2

arabidopsis, sequence, protein, api, intermine,  

Retrieve a JSON of the protein sequence provided a locus identifier.

aip/
get_sequence_by_coordinate
0.3

arabidopsis, sequence, gene, api, intermine, msarmien,  

Retrieve a json of the sequence provided a coordinate location on the A.thaliana genome.

aip/
get_sequence_by_identifier
0.3

arabidopsis, sequence, gene, api, intermine, msarmien,  

Retrieve a json of the sequence provided a locus identifier.

aip/
get_thalemine_lists
1.2

arabidopsis, thalemine, list,  

Show all ThaleMine lists the current user can access

aip/
get_thalemine_user
1.1

arabidopsis, thalemine,  

Get information about the current ThaleMine user

araport/
go_by_geneid
1.1

gene, thalemine, intermine, iniyan,  

Araport API that serves GO information about genes.